Variant report

Variant	rs57705126
Chromosome Location	chr4:74283242-74283243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12507809	1.00[AMR][1000 genomes]
rs12647948	1.00[AMR][1000 genomes]
rs12649635	1.00[AMR][1000 genomes]
rs13121823	1.00[AMR][1000 genomes]
rs16849606	1.00[AMR][1000 genomes]
rs4403011	1.00[AMR][1000 genomes]
rs4413377	1.00[AMR][1000 genomes]
rs4463038	1.00[AMR][1000 genomes]
rs4694158	1.00[AMR][1000 genomes]
rs4694594	1.00[AMR][1000 genomes]
rs4694595	1.00[AMR][1000 genomes]
rs56349598	1.00[AMR][1000 genomes]
rs61020873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6446916	1.00[AMR][1000 genomes]
rs6446918	1.00[AMR][1000 genomes]
rs6813601	1.00[AMR][1000 genomes]
rs6814545	1.00[AMR][1000 genomes]
rs6824747	1.00[AMR][1000 genomes]
rs6855107	1.00[AMR][1000 genomes]
rs7657169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv879490	chr4:74258832-74285223	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879491	chr4:74275515-74292407	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74272000-74283400	Transcr. at gene 5' and 3'	Liver	Liver
2	chr4:74272000-74298200	Weak transcription	Pancreas	Pancrea
3	chr4:74280400-74286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:74283200-74283600	Active TSS	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links