Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74123736..74126627-chr4:74160812..74162921,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132466	Chromatin interaction
ENSG00000250220	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10938069	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12507809	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12647948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12649635	1.00[AMR][1000 genomes]
rs13121823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1913149	1.00[YRI][hapmap]
rs1913150	1.00[AMR][1000 genomes]
rs4403011	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4413377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4463038	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4694158	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4694594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4694595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56349598	1.00[AMR][1000 genomes]
rs57705126	1.00[AMR][1000 genomes]
rs61020873	1.00[AMR][1000 genomes]
rs61741433	1.00[AMR][1000 genomes]
rs6446915	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6446916	1.00[AMR][1000 genomes]
rs6446918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6822576	1.00[AMR][1000 genomes]
rs6824747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847770	0.87[MKK][hapmap]
rs6855107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7377358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7657169	1.00[AMR][1000 genomes]
rs9993141	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74159000-74164800	Weak transcription	Liver	Liver
2	chr4:74159000-74170200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:74159000-74174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:74159600-74162600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:74160000-74161400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:74160800-74161200	ZNF genes & repeats	Aorta	Aorta

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