Variant report

Variant	rs4699049
Chromosome Location	chr4:103951624-103951625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103937535..103939748-chr4:103948954..103951628,2	MCF-7	breast:

Extended variants
information (count: 160 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10003326	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10012413	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs10015289	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10029073	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10031181	0.81[EUR][1000 genomes]
rs10032234	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1080081	1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097796	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097797	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11722779	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11731885	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11737544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11938650	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500379	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12501737	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12508069	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13113923	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13117110	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13130741	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13144033	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13150426	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1383733	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17033381	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17215211	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086499	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs223308	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs223313	0.84[CEU][hapmap];0.91[CHB][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap]
rs223314	0.91[CEU][hapmap]
rs223315	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs223318	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs223324	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap]
rs223326	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223330	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223334	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap]
rs223338	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223339	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs223346	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223347	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223349	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223350	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs223353	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs223356	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223358	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223359	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs223363	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs223367	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs223381	0.92[CEU][hapmap]
rs28445579	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28636930	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2866417	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28778380	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28845922	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2903284	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34506429	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34725541	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3843441	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3857198	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3857199	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3857200	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3886722	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3886723	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3960788	0.94[ASN][1000 genomes]
rs3974478	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3974481	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3974485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3974599	0.80[EUR][1000 genomes]
rs3974604	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3974605	0.82[EUR][1000 genomes]
rs3974606	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3974608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4235409	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4339216	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4382039	0.81[ASN][1000 genomes]
rs4446311	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4455413	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4455415	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4530634	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4533776	0.85[ASN][1000 genomes]
rs4540048	0.82[EUR][1000 genomes]
rs4596243	0.89[EUR][1000 genomes]
rs4623004	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4645215	0.81[ASN][1000 genomes]
rs4698864	0.82[EUR][1000 genomes]
rs4698867	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4698874	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4699035	0.83[ASN][1000 genomes]
rs4699037	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4699039	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4699040	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4699042	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4699044	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4699045	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699046	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4699047	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5028609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6419160	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs6533035	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6533037	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6533041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6533046	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6533050	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533052	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6810668	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6815526	0.81[ASN][1000 genomes]
rs6815540	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6818418	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6821173	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6821247	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6821545	0.90[LWK][hapmap];0.83[YRI][hapmap]
rs6823625	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs6824070	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6828072	0.84[EUR][1000 genomes]
rs6830193	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6841492	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6842179	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6846762	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6847093	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6847191	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6852141	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6853193	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6856176	0.82[ASN][1000 genomes]
rs724446	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs724447	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7254	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs7375679	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7659468	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7660298	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7663876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7665655	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7672319	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7676736	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676765	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs7676943	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7677003	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7678030	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7681002	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7681629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7682755	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7685399	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7686957	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7687092	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7687707	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7688014	0.80[AMR][1000 genomes]
rs7688940	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7694724	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7695096	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7697171	0.89[EUR][1000 genomes]
rs7698608	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9307280	0.80[ASN][1000 genomes]
rs9307281	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9760180	0.83[ASN][1000 genomes]
rs9917919	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9999303	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757946	chr4:103780705-104057321	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759270	chr4:103780705-104057321	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv461598	chr4:103807720-103953389	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv594978	chr4:103807720-103953389	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3429917	chr4:103915319-104207455	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv830021	chr4:103934454-104100588	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs4699049	CISD2	cis	Skin Sun Exposed Lower leg	GTEx
rs4699049	MANBA	Cis_1M	lymphoblastoid	RTeQTL
rs4699049	CISD2	cis	Nerve Tibial	GTEx
rs4699049	CISD2	cis	multi-tissue	Pritchard
rs4699049	CISD2	cis	Esophagus Muscularis	GTEx
rs4699049	LRRC37A15P	cis	lung	GTEx
rs4699049	CISD2	cis	lymphoblastoid	seeQTL
rs4699049	MANBA	cis	parietal	SCAN
rs4699049	CISD2	cis	parietal	SCAN
rs4699049	KRT8P46	cis	lung	GTEx
rs4699049	CISD2	cis	cerebellum	SCAN
rs4699049	CISD2	Cis_1M	lymphoblastoid	RTeQTL
rs4699049	MANBA	cis	multi-tissue	Pritchard

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103941000-103953800	Weak transcription	Gastric	stomach
2	chr4:103941400-103953800	Weak transcription	Brain Germinal Matrix	brain
3	chr4:103941400-103957200	Weak transcription	Fetal Brain Male	brain
4	chr4:103941400-103964400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:103941400-103964800	Weak transcription	HSMM	muscle
6	chr4:103941400-103965200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:103941400-103967200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:103941400-103967800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:103941400-103968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:103941400-103968000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:103941400-103969000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:103941400-103969200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:103941400-103974000	Weak transcription	Esophagus	oesophagus
14	chr4:103941400-103975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:103941400-103989400	Weak transcription	NH-A	brain
16	chr4:103941400-103996600	Weak transcription	Lung	lung
17	chr4:103941600-103952600	Weak transcription	Hela-S3	cervix
18	chr4:103941600-103957000	Weak transcription	Ovary	ovary
19	chr4:103941600-103957000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:103941600-103963000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:103941600-103965400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr4:103941600-103965400	Weak transcription	NHEK	skin
23	chr4:103941600-103968000	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:103941600-103969200	Weak transcription	Adipose Nuclei	Adipose
25	chr4:103941600-103969200	Weak transcription	Fetal Thymus	thymus
26	chr4:103941600-103989000	Weak transcription	HMEC	breast
27	chr4:103941800-103953800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr4:103941800-103955000	Weak transcription	Brain Anterior Caudate	brain
29	chr4:103941800-103964200	Weak transcription	GM12878-XiMat	blood
30	chr4:103941800-103964400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr4:103941800-103965200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr4:103941800-103965400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr4:103941800-103969600	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:103941800-103994600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr4:103942000-103952000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr4:103942000-103964400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr4:103942000-103964800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr4:103942000-103965200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr4:103942000-103969600	Weak transcription	Primary T cells from cord blood	blood
40	chr4:103942000-103994400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr4:103942000-103995200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr4:103942400-103964400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:103946000-103953200	Strong transcription	Dnd41	blood
44	chr4:103946200-103956400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:103947600-103968000	Weak transcription	NHDF-Ad	bronchial
46	chr4:103947800-103965000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr4:103947800-103996000	Weak transcription	Brain Angular Gyrus	brain
48	chr4:103948200-103969600	Weak transcription	Left Ventricle	heart
49	chr4:103948600-103970000	Weak transcription	Aorta	Aorta
50	chr4:103949800-103953200	Strong transcription	Liver	Liver

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