Variant report

Variant	rs7660298
Chromosome Location	chr4:103960768-103960769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103747731..103749382-chr4:103960126..103962297,2	MCF-7	breast:
2	chr4:103960386..103964611-chr4:103965527..103969070,4	K562	blood:
3	chr4:103960272..103961893-chr4:103996200..103998232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164038	Chromatin interaction
ENSG00000246560	Chromatin interaction
ENSG00000109332	Chromatin interaction

Extended variants
information (count: 150 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10003326	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10012413	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs10015289	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10029073	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10032234	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1080081	1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.91[LWK][hapmap];0.83[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097796	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097797	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11722779	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11731885	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11737544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11938650	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12500379	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12501737	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12508069	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13113923	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13117110	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13130741	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13144033	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13150426	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1383733	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17033381	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17215211	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2086499	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs223308	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs223313	0.84[CEU][hapmap];0.91[CHB][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs223314	0.91[CEU][hapmap]
rs223315	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs223318	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs223324	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs223326	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223330	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223334	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs223338	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223339	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs223346	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223347	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223349	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223350	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs223353	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs223356	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223358	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223359	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs223363	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs223367	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs28445579	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28636930	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2866417	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28778380	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28845922	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2903284	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34506429	0.88[ASN][1000 genomes]
rs34725541	0.82[ASN][1000 genomes]
rs3843441	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3857198	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3857199	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3857200	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3886722	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3886723	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3960788	0.92[ASN][1000 genomes]
rs3974478	0.83[ASN][1000 genomes]
rs3974481	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3974485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3974604	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3974606	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3974608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4235409	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4339216	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4382039	0.81[ASN][1000 genomes]
rs4446311	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4455413	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4455415	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4530634	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4533776	0.85[ASN][1000 genomes]
rs4596243	0.84[EUR][1000 genomes]
rs4623004	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4645215	0.82[ASN][1000 genomes]
rs4698867	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4698874	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699035	0.84[ASN][1000 genomes]
rs4699037	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4699039	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4699040	0.86[ASN][1000 genomes]
rs4699042	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4699044	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699045	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4699046	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699047	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699049	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5028609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6419160	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap]
rs6533035	0.81[ASN][1000 genomes]
rs6533037	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6533041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6533046	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6533050	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533052	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6810668	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6815526	0.82[ASN][1000 genomes]
rs6815540	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6818418	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6821173	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6821247	0.85[ASN][1000 genomes]
rs6821545	0.82[LWK][hapmap];0.83[YRI][hapmap]
rs6823625	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.93[TSI][hapmap]
rs6824070	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6830193	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6841492	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6842179	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6846762	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6847093	0.83[ASN][1000 genomes]
rs6847191	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6852141	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6853193	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6856176	0.83[ASN][1000 genomes]
rs724446	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs724447	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7254	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs7375679	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7659468	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7663876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7665655	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7672319	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7676736	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7676765	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs7676943	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7677003	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7678030	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7681002	0.88[ASN][1000 genomes]
rs7681629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7682755	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7685399	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7686957	0.83[ASN][1000 genomes]
rs7687092	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7687707	0.81[ASN][1000 genomes]
rs7688940	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7694724	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695096	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7697171	0.84[EUR][1000 genomes]
rs7698608	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9307280	0.81[ASN][1000 genomes]
rs9307281	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9760180	0.83[ASN][1000 genomes]
rs9917919	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9999303	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757946	chr4:103780705-104057321	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759270	chr4:103780705-104057321	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3429917	chr4:103915319-104207455	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv830021	chr4:103934454-104100588	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs7660298	MANBA	cis	multi-tissue	Pritchard
rs7660298	CISD2	cis	Skin Sun Exposed Lower leg	GTEx
rs7660298	CISD2	cis	cerebellum	SCAN
rs7660298	LRRC37A15P	cis	lung	GTEx
rs7660298	CISD2	cis	Esophagus Muscularis	GTEx
rs7660298	CISD2	Cis_1M	lymphoblastoid	RTeQTL
rs7660298	MANBA	Cis_1M	lymphoblastoid	RTeQTL
rs7660298	CISD2	cis	Nerve Tibial	GTEx
rs7660298	CISD2	cis	parietal	SCAN
rs7660298	KRT8P46	cis	lung	GTEx
rs7660298	CISD2	cis	multi-tissue	Pritchard
rs7660298	CISD2	cis	lymphoblastoid	seeQTL
rs7660298	MANBA	cis	parietal	SCAN

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103941400-103964400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:103941400-103964800	Weak transcription	HSMM	muscle
3	chr4:103941400-103965200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:103941400-103967200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:103941400-103967800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:103941400-103968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:103941400-103968000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:103941400-103969000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:103941400-103969200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:103941400-103974000	Weak transcription	Esophagus	oesophagus
11	chr4:103941400-103975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:103941400-103989400	Weak transcription	NH-A	brain
13	chr4:103941400-103996600	Weak transcription	Lung	lung
14	chr4:103941600-103963000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:103941600-103965400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:103941600-103965400	Weak transcription	NHEK	skin
17	chr4:103941600-103968000	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:103941600-103969200	Weak transcription	Adipose Nuclei	Adipose
19	chr4:103941600-103969200	Weak transcription	Fetal Thymus	thymus
20	chr4:103941600-103989000	Weak transcription	HMEC	breast
21	chr4:103941800-103964200	Weak transcription	GM12878-XiMat	blood
22	chr4:103941800-103964400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:103941800-103965200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:103941800-103965400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr4:103941800-103969600	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:103941800-103994600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr4:103942000-103964400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr4:103942000-103964800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr4:103942000-103965200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:103942000-103969600	Weak transcription	Primary T cells from cord blood	blood
31	chr4:103942000-103994400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr4:103942000-103995200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:103942400-103964400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:103947600-103968000	Weak transcription	NHDF-Ad	bronchial
35	chr4:103947800-103965000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:103947800-103996000	Weak transcription	Brain Angular Gyrus	brain
37	chr4:103948200-103969600	Weak transcription	Left Ventricle	heart
38	chr4:103948600-103970000	Weak transcription	Aorta	Aorta
39	chr4:103951400-103965000	Weak transcription	Fetal Brain Female	brain
40	chr4:103951400-103972400	Weak transcription	NHLF	lung
41	chr4:103952400-103962600	Weak transcription	HepG2	liver
42	chr4:103952400-103965400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:103952400-103994600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr4:103952600-103965200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:103952600-103965200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr4:103952800-103965200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:103952800-103996600	Weak transcription	Fetal Stomach	stomach
48	chr4:103953000-103965200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:103954000-103973600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:103954000-103996200	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links