Variant report

Variant	rs7677003
Chromosome Location	chr4:103889537-103889538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10004342	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10012413	0.85[ASN][1000 genomes]
rs10015289	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10029073	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10031181	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10032234	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1080081	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11097796	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097797	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11722779	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11731885	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11737544	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11938650	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12500379	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12501737	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12508069	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13113923	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13117110	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13130741	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13136616	0.85[ASN][1000 genomes]
rs13144033	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13150426	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1383733	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17033381	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17215211	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2086499	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28367331	0.86[ASN][1000 genomes]
rs28445579	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28636930	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2866417	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28778380	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28811632	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28845922	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2903284	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34506429	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34725541	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3843441	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3857198	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3857199	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3857200	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3886722	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3886723	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3960788	0.94[ASN][1000 genomes]
rs3974478	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3974481	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3974485	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3974599	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3974603	0.81[EUR][1000 genomes]
rs3974604	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3974605	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3974606	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3974608	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4235407	0.85[ASN][1000 genomes]
rs4235409	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4334755	0.83[ASN][1000 genomes]
rs4339216	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4382039	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4446311	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4455413	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4455415	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4525977	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4530634	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4533776	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4540048	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4596243	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4623004	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4642252	0.83[ASN][1000 genomes]
rs4645215	0.90[ASN][1000 genomes]
rs4698864	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4698867	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4698874	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699032	0.85[ASN][1000 genomes]
rs4699033	0.85[ASN][1000 genomes]
rs4699034	0.81[ASN][1000 genomes]
rs4699035	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699037	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4699039	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699040	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4699042	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4699044	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699045	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699046	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699047	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699049	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5028609	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533030	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6533035	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6533037	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6533046	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6533050	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533051	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533052	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6810668	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6815526	0.90[ASN][1000 genomes]
rs6815540	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6818418	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821173	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6821247	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6822658	0.83[ASN][1000 genomes]
rs6823625	0.82[ASN][1000 genomes]
rs6824070	0.90[ASN][1000 genomes]
rs6828072	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6830193	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6830407	0.85[ASN][1000 genomes]
rs6841492	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6842179	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846762	0.85[ASN][1000 genomes]
rs6847093	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6847191	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6852141	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6853193	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856176	0.90[ASN][1000 genomes]
rs724446	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs724447	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7375679	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7659468	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7660298	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7663876	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7665655	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7672319	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676736	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7676943	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7678030	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7681002	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7681629	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682755	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7685399	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7686957	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7687092	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7687707	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7688940	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7694724	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7695096	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7697171	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7698608	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9307280	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9760180	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9917919	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9999303	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757946	chr4:103780705-104057321	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759270	chr4:103780705-104057321	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv879683	chr4:103785051-103916717	Flanking Active TSS Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv461598	chr4:103807720-103953389	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv594978	chr4:103807720-103953389	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv1821875	chr4:103810823-103895872	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1798872	chr4:103810823-103898392	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv879684	chr4:103887561-103939894	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7677003	CISD2	cis	Nerve Tibial	GTEx
rs7677003	LRRC37A15P	cis	lung	GTEx
rs7677003	CISD2	cis	Skin Sun Exposed Lower leg	GTEx
rs7677003	KRT8P46	cis	lung	GTEx
rs7677003	CISD2	cis	Esophagus Muscularis	GTEx
rs7677003	MANBA	Cis_1M	lymphoblastoid	RTeQTL
rs7677003	CISD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103878000-103911200	Weak transcription	Ovary	ovary
2	chr4:103889200-103891400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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