Variant report

Variant	rs4699389
Chromosome Location	chr4:100983722-100983723
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10029894	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11732283	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4235442	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4593140	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4635824	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699390	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699770	0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.87[MKK][hapmap];0.84[TSI][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55705206	0.92[ASN][1000 genomes]
rs61294522	0.80[ASN][1000 genomes]
rs62306122	0.92[ASN][1000 genomes]
rs6834862	0.80[ASN][1000 genomes]
rs6837281	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6856293	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7697932	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4699389	DAPP1	Cis_1M	lymphoblastoid	RTeQTL
rs4699389	C4orf37	cis	cerebellum	SCAN
rs4699389	ADH5	cis	cerebellum	SCAN
rs4699389	DNAJB14	cis	parietal	SCAN
rs4699389	MAPKSP1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100982600-100983800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:100982800-100984400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:100983200-100983800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:100983200-100985200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:100983200-100985400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:100983600-100984400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:100983600-100984800	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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