Variant report

Variant	rs6834862
Chromosome Location	chr4:101013182-101013183
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10029894	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11729426	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11732283	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12649983	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4128310	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4235442	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4593140	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4635824	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4699389	0.80[ASN][1000 genomes]
rs4699390	0.84[ASN][1000 genomes]
rs4699391	0.93[ASN][1000 genomes]
rs4699392	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4699770	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4699773	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4699774	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55705206	0.87[ASN][1000 genomes]
rs61294522	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62306122	0.87[ASN][1000 genomes]
rs62306150	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62307560	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6532843	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6837281	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6840267	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6856293	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7671507	0.83[ASN][1000 genomes]
rs7671736	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7682156	0.94[EUR][1000 genomes]
rs7697932	0.90[ASN][1000 genomes]
rs7698869	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101008600-101014000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:101008600-101014200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:101008600-101017800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:101008800-101014200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:101008800-101014200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:101008800-101014200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:101009000-101014400	Weak transcription	NHEK	skin
9	chr4:101009200-101013600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:101009200-101013800	Weak transcription	Fetal Stomach	stomach
11	chr4:101009200-101014400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:101009200-101017600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:101009600-101014400	Weak transcription	Adipose Nuclei	Adipose
14	chr4:101009800-101014400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:101009800-101014400	Weak transcription	Fetal Lung	lung
16	chr4:101009800-101014800	Weak transcription	Placenta	Placenta
17	chr4:101010200-101014200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:101010200-101014400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links