Variant report

Variant	rs4699391
Chromosome Location	chr4:101019539-101019540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10029894	0.83[ASN][1000 genomes]
rs11729426	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11732283	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12649983	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4128310	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4235442	0.83[ASN][1000 genomes]
rs4593140	0.84[ASN][1000 genomes]
rs4635824	0.83[ASN][1000 genomes]
rs4699392	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4699770	0.83[ASN][1000 genomes]
rs4699773	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4699774	0.87[ASN][1000 genomes]
rs55705206	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61294522	0.93[ASN][1000 genomes]
rs62306122	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62306150	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62307560	0.83[ASN][1000 genomes]
rs6532843	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6834862	0.93[ASN][1000 genomes]
rs6837281	0.83[ASN][1000 genomes]
rs6840267	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6856293	0.82[ASN][1000 genomes]
rs7671507	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7671736	0.90[ASN][1000 genomes]
rs7682156	0.83[ASN][1000 genomes]
rs7697932	0.86[ASN][1000 genomes]
rs7698869	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101014600-101019800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:101015200-101020600	Weak transcription	Fetal Intestine Large	intestine
4	chr4:101015200-101021600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:101015200-101022200	Weak transcription	Fetal Thymus	thymus
6	chr4:101015400-101020800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:101015400-101021800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:101015400-101022000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:101015600-101022200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr4:101017200-101021800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:101017400-101022000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr4:101017400-101022400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr4:101017600-101021400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:101017800-101021400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr4:101017800-101021800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:101017800-101022000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:101017800-101022000	Weak transcription	Dnd41	blood
18	chr4:101017800-101022200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:101018000-101020000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:101018000-101022200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:101018200-101021600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:101018200-101022200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:101019200-101019600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:101019200-101019600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr4:101019200-101020600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:101019400-101019600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr4:101019400-101019600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:101019400-101019800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr4:101019400-101020200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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