Variant report

Variant	rs6840267
Chromosome Location	chr4:101015440-101015441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10029894	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11729426	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11732283	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649983	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128310	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4235442	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4593140	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4635824	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4699391	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4699392	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699770	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4699773	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699774	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55705206	0.83[ASN][1000 genomes]
rs61294522	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62306122	0.83[ASN][1000 genomes]
rs62306150	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62307560	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6532843	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834862	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6837281	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6856293	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7671507	0.90[ASN][1000 genomes]
rs7671736	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7682156	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7697932	0.86[ASN][1000 genomes]
rs7698869	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101008600-101017800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:101009200-101017600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:101013400-101016800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:101013600-101015800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:101013600-101017000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:101014000-101016000	Enhancers	Colon Smooth Muscle	Colon
8	chr4:101014200-101015600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:101014200-101015800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr4:101014200-101016800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:101014200-101017400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr4:101014400-101015600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:101014400-101015800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:101014400-101018000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr4:101014600-101016800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:101014600-101019800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:101014800-101015600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr4:101014800-101015600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr4:101014800-101015800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr4:101015000-101016000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr4:101015000-101017200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:101015200-101016000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:101015200-101016800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:101015200-101017000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:101015200-101017000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:101015200-101017000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:101015200-101017000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:101015200-101017000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:101015200-101017000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr4:101015200-101017000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:101015200-101017000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr4:101015200-101017000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr4:101015200-101017000	Weak transcription	HMEC	breast
34	chr4:101015200-101017000	Weak transcription	HUVEC	blood vessel
35	chr4:101015200-101017000	Weak transcription	NHEK	skin
36	chr4:101015200-101017200	Weak transcription	Primary B cells from cord blood	blood
37	chr4:101015200-101017400	Weak transcription	Fetal Intestine Small	intestine
38	chr4:101015200-101019000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:101015200-101020600	Weak transcription	Fetal Intestine Large	intestine
40	chr4:101015200-101021600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr4:101015200-101022200	Weak transcription	Fetal Thymus	thymus
42	chr4:101015400-101017000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr4:101015400-101017000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr4:101015400-101017000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr4:101015400-101017000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr4:101015400-101017200	Weak transcription	Dnd41	blood
47	chr4:101015400-101020800	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr4:101015400-101021800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr4:101015400-101022000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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