Variant report

Variant	rs12649983
Chromosome Location	chr4:101025602-101025603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100868231..100870491-chr4:101024426..101027309,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10029894	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11729426	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11732283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128310	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4235442	0.83[ASN][1000 genomes]
rs4593140	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4635824	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4699389	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4699391	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4699392	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699770	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4699773	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699774	0.84[CEU][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55705206	0.83[ASN][1000 genomes]
rs61294522	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62306122	0.83[ASN][1000 genomes]
rs62306150	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62307560	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6532843	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834862	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6837281	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6840267	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856293	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7671507	0.90[ASN][1000 genomes]
rs7671736	0.96[CEU][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7682156	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7697932	0.86[ASN][1000 genomes]
rs7698869	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101022600-101027600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:101022600-101027800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:101022600-101027800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:101022600-101027800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr4:101022600-101027800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:101022600-101027800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:101022600-101028000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:101022600-101028000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:101022600-101028000	Weak transcription	Fetal Thymus	thymus
11	chr4:101022600-101030200	Weak transcription	Fetal Intestine Large	intestine
12	chr4:101022800-101027800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr4:101022800-101028000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:101022800-101028000	Weak transcription	GM12878-XiMat	blood
15	chr4:101023000-101027600	Weak transcription	Dnd41	blood
16	chr4:101023000-101027800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:101023400-101027400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr4:101024000-101027600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links