Variant report

Variant	rs7698869
Chromosome Location	chr4:101035820-101035821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10029894	0.84[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11729426	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11732283	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12649983	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4128310	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235442	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4593140	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4635824	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699389	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs4699391	0.98[ASN][1000 genomes]
rs4699392	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699770	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699773	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699774	0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55705206	0.82[ASN][1000 genomes]
rs61294522	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62306122	0.82[ASN][1000 genomes]
rs62306150	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62307560	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532843	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834862	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6837281	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6840267	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6856293	0.84[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7671507	0.92[ASN][1000 genomes]
rs7671736	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7682156	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7697932	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101034200-101037400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:101034200-101037800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:101034400-101037000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:101035000-101037200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:101035200-101036200	Weak transcription	Brain Anterior Caudate	brain
6	chr4:101035400-101036200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:101035400-101036200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:101035400-101036600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:101035600-101036000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:101035600-101036000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:101035800-101037200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:101035800-101037600	Enhancers	Fetal Kidney	kidney

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