Variant report

Variant	rs6856293
Chromosome Location	chr4:100984813-100984814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100919042..100919985-chr4:100984315..100985120,2	MCF-7	breast:
2	chr4:100871002..100872693-chr4:100984695..100986300,2	K562	blood:
3	chr4:100868036..100870819-chr4:100983381..100985122,2	K562	blood:
4	chr4:100977704..100980189-chr4:100983347..100984951,2	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10029894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11729426	0.84[EUR][1000 genomes]
rs11732283	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12649983	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4128310	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4235442	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4593140	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4635824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699389	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4699390	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699391	0.82[ASN][1000 genomes]
rs4699392	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4699770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699773	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699774	0.83[CEU][hapmap];0.88[JPT][hapmap]
rs55705206	0.98[ASN][1000 genomes]
rs61294522	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62306122	0.98[ASN][1000 genomes]
rs62306150	0.82[EUR][1000 genomes]
rs6532843	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6834862	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6837281	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6840267	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7671736	0.88[CEU][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs7697932	0.94[ASN][1000 genomes]
rs7698869	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100983200-100985200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:100983200-100985400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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