Variant report

Variant	rs6837281
Chromosome Location	chr4:100990300-100990301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100985133..100987017-chr4:100990032..100992836,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10029894	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097687	0.88[AFR][1000 genomes]
rs11729426	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11732283	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11937848	0.86[AFR][1000 genomes]
rs11942532	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs12649983	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36109329	0.88[AFR][1000 genomes]
rs4128310	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4235442	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4492010	0.89[AFR][1000 genomes]
rs4593140	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4635824	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699389	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4699390	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4699391	0.83[ASN][1000 genomes]
rs4699392	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699773	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4699774	0.89[JPT][hapmap]
rs55705206	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56159765	0.89[AFR][1000 genomes]
rs56311063	0.89[AFR][1000 genomes]
rs57315614	0.89[AFR][1000 genomes]
rs61294522	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62306122	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62306150	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62307560	0.87[EUR][1000 genomes]
rs6532841	0.88[AFR][1000 genomes]
rs6532842	0.93[AFR][1000 genomes]
rs6532843	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67594720	0.89[AFR][1000 genomes]
rs6825579	0.88[AFR][1000 genomes]
rs6830286	0.93[AFR][1000 genomes]
rs6834862	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6836304	0.89[AFR][1000 genomes]
rs6840267	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6856293	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7340886	0.94[AFR][1000 genomes]
rs7660479	0.89[AFR][1000 genomes]
rs7662195	0.87[AFR][1000 genomes]
rs7665301	0.86[AFR][1000 genomes]
rs7668076	0.94[AFR][1000 genomes]
rs7671736	0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs7682156	0.87[EUR][1000 genomes]
rs7687287	0.97[YRI][hapmap];0.89[AFR][1000 genomes]
rs7697932	0.95[ASN][1000 genomes]
rs7698869	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100990200-100992000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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