Variant report

Variant	rs4699419
Chromosome Location	chr4:96254238-96254239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11937484	0.85[EUR][1000 genomes]
rs1351772	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1843018	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2621439	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2621462	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2621463	0.92[EUR][1000 genomes]
rs2626050	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2626051	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2626057	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2626062	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2626063	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2626069	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56184934	0.81[EUR][1000 genomes]
rs56663807	0.81[EUR][1000 genomes]
rs56916207	0.81[EUR][1000 genomes]
rs58809210	0.81[EUR][1000 genomes]
rs59179643	0.81[EUR][1000 genomes]
rs61570927	0.84[EUR][1000 genomes]
rs62307079	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6532550	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6856212	0.81[EUR][1000 genomes]
rs72659904	0.81[EUR][1000 genomes]
rs7436599	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7440986	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7441683	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2763844	chr4:96246506-96255197	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96241000-96260800	Weak transcription	Brain Substantia Nigra	brain
3	chr4:96241000-96267600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:96242000-96260200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:96243000-96259600	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:96243400-96263200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:96246200-96255000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:96247200-96265000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:96248600-96257800	Weak transcription	Brain Anterior Caudate	brain
10	chr4:96250200-96263200	Weak transcription	Brain Angular Gyrus	brain
11	chr4:96250400-96263000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:96250400-96263000	Weak transcription	Fetal Stomach	stomach
13	chr4:96250600-96263200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:96252600-96255200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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