Variant report

Variant	rs59179643
Chromosome Location	chr4:96282065-96282066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96277583..96279731-chr4:96280284..96282864,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11937484	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1351772	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1542616	0.95[EUR][1000 genomes]
rs1843018	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2621439	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2621462	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2621463	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2626050	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2626051	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2626057	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2626062	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2626063	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2626069	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4699419	0.81[EUR][1000 genomes]
rs56184934	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56219612	0.95[EUR][1000 genomes]
rs56663807	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56916207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58809210	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61076479	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61570927	0.93[EUR][1000 genomes]
rs62307079	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6532550	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6846883	0.95[EUR][1000 genomes]
rs6856212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72659904	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7436599	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7440986	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7441683	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96264400-96283600	Weak transcription	Fetal Stomach	stomach
3	chr4:96272400-96282400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:96273800-96285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:96278800-96295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:96279200-96284600	Enhancers	Fetal Lung	lung
7	chr4:96280000-96282200	Weak transcription	Liver	Liver
8	chr4:96280000-96284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:96280600-96283200	Enhancers	Brain Substantia Nigra	brain
10	chr4:96280800-96282800	Enhancers	Fetal Kidney	kidney
11	chr4:96281800-96282200	Weak transcription	Brain Angular Gyrus	brain
12	chr4:96281800-96282200	Weak transcription	A549	lung
13	chr4:96281800-96283000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr4:96281800-96283200	Enhancers	Brain Hippocampus Middle	brain
15	chr4:96281800-96283400	Enhancers	Brain Anterior Caudate	brain
16	chr4:96281800-96284800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:96281800-96285200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:96282000-96282400	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr4:96282000-96282400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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