Variant report

Variant	rs2626051
Chromosome Location	chr4:96260778-96260779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96259189..96261851-chr4:96279495..96281301,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10026678	0.85[YRI][hapmap]
rs11937484	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1351772	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1542616	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1843018	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2621439	1.00[CEU][hapmap];0.92[GIH][hapmap];0.85[LWK][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2621462	1.00[CEU][hapmap];0.92[GIH][hapmap];0.87[LWK][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2621463	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2626050	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2626057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2626062	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2626063	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.98[LWK][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2626069	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4130507	0.89[YRI][hapmap]
rs4699419	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56184934	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56219612	0.85[EUR][1000 genomes]
rs56663807	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56916207	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58809210	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59179643	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61076479	0.88[EUR][1000 genomes]
rs61570927	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62307079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6532550	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6846883	0.85[EUR][1000 genomes]
rs6856212	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72659904	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7436599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7440986	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7441683	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs997464	0.80[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96241000-96260800	Weak transcription	Brain Substantia Nigra	brain
3	chr4:96241000-96267600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:96243400-96263200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:96247200-96265000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:96250200-96263200	Weak transcription	Brain Angular Gyrus	brain
7	chr4:96250400-96263000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:96250400-96263000	Weak transcription	Fetal Stomach	stomach
9	chr4:96250600-96263200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:96256600-96262800	Weak transcription	Fetal Lung	lung
11	chr4:96260400-96265800	Weak transcription	Brain Hippocampus Middle	brain

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