Variant report

Variant	rs2626057
Chromosome Location	chr4:96262548-96262549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11937484	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1351772	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1542616	0.86[EUR][1000 genomes]
rs1586164	0.81[AFR][1000 genomes]
rs1843018	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2621439	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2621462	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2621463	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2626050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2626051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2626062	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2626063	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2626069	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4699419	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56184934	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56219612	0.86[EUR][1000 genomes]
rs56663807	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56916207	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58809210	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59179643	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61076479	0.89[EUR][1000 genomes]
rs61570927	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62307079	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6532550	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6846883	0.86[EUR][1000 genomes]
rs6856212	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72659904	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7436599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7440986	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7441683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96241000-96267600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:96243400-96263200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:96247200-96265000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:96250200-96263200	Weak transcription	Brain Angular Gyrus	brain
6	chr4:96250400-96263000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:96250400-96263000	Weak transcription	Fetal Stomach	stomach
8	chr4:96250600-96263200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:96256600-96262800	Weak transcription	Fetal Lung	lung
10	chr4:96260400-96265800	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:96261000-96263200	Weak transcription	Brain Substantia Nigra	brain
12	chr4:96261800-96265200	Weak transcription	Fetal Intestine Small	intestine

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