Variant report

Variant	rs61076479
Chromosome Location	chr4:96279810-96279811
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11937484	0.92[EUR][1000 genomes]
rs1351772	0.85[EUR][1000 genomes]
rs1542616	0.94[EUR][1000 genomes]
rs1843018	0.88[EUR][1000 genomes]
rs2621439	0.86[EUR][1000 genomes]
rs2621462	0.85[EUR][1000 genomes]
rs2621463	0.85[EUR][1000 genomes]
rs2626050	0.89[EUR][1000 genomes]
rs2626051	0.88[EUR][1000 genomes]
rs2626057	0.89[EUR][1000 genomes]
rs2626062	0.88[EUR][1000 genomes]
rs2626063	0.87[EUR][1000 genomes]
rs2626069	0.88[EUR][1000 genomes]
rs56184934	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56219612	0.94[EUR][1000 genomes]
rs56663807	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56916207	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58809210	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59179643	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61570927	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62307079	0.88[EUR][1000 genomes]
rs6532550	0.88[EUR][1000 genomes]
rs6846883	0.94[EUR][1000 genomes]
rs6856212	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72659904	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7436599	0.88[EUR][1000 genomes]
rs7440986	0.88[EUR][1000 genomes]
rs7441683	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96264400-96283600	Weak transcription	Fetal Stomach	stomach
3	chr4:96272400-96282400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:96273800-96285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:96274200-96281600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:96276800-96280600	Weak transcription	Brain Substantia Nigra	brain
7	chr4:96276800-96281800	Weak transcription	Brain Anterior Caudate	brain
8	chr4:96278800-96280000	Enhancers	Fetal Kidney	kidney
9	chr4:96278800-96281800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr4:96278800-96295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:96279200-96280200	Enhancers	A549	lung
12	chr4:96279200-96284600	Enhancers	Fetal Lung	lung
13	chr4:96279400-96280400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:96279600-96280000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:96279600-96280000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:96279600-96280000	Enhancers	Liver	Liver
17	chr4:96279600-96280000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr4:96279800-96281400	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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