Variant report

Variant	rs4708147
Chromosome Location	chr6:75031258-75031259
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10485384	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1387417	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1489381	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1532101	0.95[EUR][1000 genomes]
rs16884555	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1890525	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1953177	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2352082	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4142493	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4354109	0.95[EUR][1000 genomes]
rs4706579	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4708140	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4708145	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4708146	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56984505	0.91[EUR][1000 genomes]
rs66722506	0.93[EUR][1000 genomes]
rs6907419	0.89[AFR][1000 genomes]
rs6917462	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs875303	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9293961	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9293965	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9343134	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343135	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343139	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9350532	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9352087	0.83[CHB][hapmap]
rs9352088	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9352089	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9352100	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9360768	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2829863	chr6:74976178-75040446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv7921	chr6:75029817-75031869	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75030400-75031400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:75030800-75031800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:75030800-75031800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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