Variant report

Variant	rs1953177
Chromosome Location	chr6:74979413-74979414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1038684	0.83[AMR][1000 genomes]
rs10485384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485385	0.83[AMR][1000 genomes]
rs10485386	0.83[AMR][1000 genomes]
rs10485387	0.83[AMR][1000 genomes]
rs10805997	0.83[AMR][1000 genomes]
rs12175094	0.83[AMR][1000 genomes]
rs1387417	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387418	0.83[AMR][1000 genomes]
rs1387420	0.83[AMR][1000 genomes]
rs1416395	0.82[AMR][1000 genomes]
rs1416396	0.83[AMR][1000 genomes]
rs1416397	0.81[AMR][1000 genomes]
rs1416398	0.83[AMR][1000 genomes]
rs1489380	0.83[AMR][1000 genomes]
rs1489381	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1532101	0.90[EUR][1000 genomes]
rs1552564	0.83[AMR][1000 genomes]
rs1552565	0.83[AMR][1000 genomes]
rs16884555	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884558	0.83[AMR][1000 genomes]
rs16884590	0.83[AMR][1000 genomes]
rs1844317	0.83[AMR][1000 genomes]
rs1890525	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1953176	0.83[AMR][1000 genomes]
rs2029393	0.83[AMR][1000 genomes]
rs2200809	0.83[AMR][1000 genomes]
rs2352082	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2635115	0.86[ASN][1000 genomes]
rs4142493	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4354109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4706577	0.83[AMR][1000 genomes]
rs4706578	0.83[AMR][1000 genomes]
rs4706579	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4708140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4708141	0.81[AMR][1000 genomes]
rs4708142	0.81[AMR][1000 genomes]
rs4708145	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4708146	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4708147	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56984505	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66722506	0.91[EUR][1000 genomes]
rs6917462	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7752957	0.83[AMR][1000 genomes]
rs875303	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9293958	0.83[AMR][1000 genomes]
rs9293959	0.83[AMR][1000 genomes]
rs9293960	0.83[AMR][1000 genomes]
rs9293961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293962	0.83[AMR][1000 genomes]
rs9293964	0.83[AMR][1000 genomes]
rs9293965	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9343123	0.83[AMR][1000 genomes]
rs9343134	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9343135	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9343139	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9350532	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9352083	0.81[AMR][1000 genomes]
rs9352084	0.83[AMR][1000 genomes]
rs9352085	0.83[AMR][1000 genomes]
rs9352087	0.83[CHB][hapmap];0.83[AMR][1000 genomes]
rs9352088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352100	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9359076	0.83[AMR][1000 genomes]
rs9360757	0.81[AMR][1000 genomes]
rs9360759	0.83[AMR][1000 genomes]
rs9360761	0.83[AMR][1000 genomes]
rs9360763	0.83[AMR][1000 genomes]
rs9360768	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2829863	chr6:74976178-75040446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74979000-74979600	Enhancers	Fetal Stomach	stomach
2	chr6:74979400-74979600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:74979400-74987400	Weak transcription	Fetal Muscle Leg	muscle

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