Variant report

Variant	rs4710171
Chromosome Location	chr6:167430186-167430187
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167426218..167428514-chr6:167429903..167432841,2	K562	blood:
2	chr6:167428569..167431228-chr6:167442588..167444802,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10455982	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10484530	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10484531	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1060404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946203	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10946204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10946205	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10946207	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10946208	0.87[AMR][1000 genomes]
rs12208359	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12209395	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12212247	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12213683	0.82[AMR][1000 genomes]
rs12526548	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12528323	0.82[AMR][1000 genomes]
rs12528689	0.82[AMR][1000 genomes]
rs12529876	0.82[AMR][1000 genomes]
rs13195812	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13204839	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13208636	0.82[AMR][1000 genomes]
rs1322077	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17524252	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1794696	0.90[ASN][1000 genomes]
rs1811120	0.83[ASN][1000 genomes]
rs1894603	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2001114	0.85[AMR][1000 genomes]
rs2038580	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2149093	0.80[ASN][1000 genomes]
rs2181059	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2237272	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237273	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2237276	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237277	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2239826	0.81[AMR][1000 genomes]
rs2239827	0.87[AMR][1000 genomes]
rs2282860	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2282861	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2285148	0.82[AMR][1000 genomes]
rs2301436	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs239933	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs239935	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2757042	0.82[ASN][1000 genomes]
rs2769352	0.83[ASN][1000 genomes]
rs35171809	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs364451	0.82[ASN][1000 genomes]
rs3752520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs398278	0.85[ASN][1000 genomes]
rs404222	0.90[ASN][1000 genomes]
rs408080	0.87[ASN][1000 genomes]
rs427824	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs444988	0.84[ASN][1000 genomes]
rs4710175	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4710176	0.82[AMR][1000 genomes]
rs62436765	0.86[AMR][1000 genomes]
rs6456143	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6456146	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6456149	0.82[AMR][1000 genomes]
rs6456152	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6900701	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6904946	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6909180	0.82[AMR][1000 genomes]
rs6920858	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6921588	0.81[AMR][1000 genomes]
rs6923582	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6929466	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7749278	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7766242	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs916331	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9295384	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9295385	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9348211	0.83[ASN][1000 genomes]
rs9457249	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457251	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9457254	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9457256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9457257	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9457258	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9457259	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9457260	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9459835	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9459836	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9459838	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9459839	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9459840	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9459841	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9459842	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9459845	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9459846	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9459849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9459854	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9459855	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9459872	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
5	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
10	nsv464140	chr6:167426681-167492552	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4710171	RNASET2	cis	Whole Blood	GTEx
rs4710171	AL133458.1	cis	lung	GTEx
rs4710171	AL133458.1	cis	Whole Blood	GTEx
rs4710171	RNASET2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167413600-167438800	Weak transcription	Right Ventricle	heart
2	chr6:167413600-167449200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:167413600-167452400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:167413800-167436800	Weak transcription	HSMMtube	muscle
5	chr6:167414600-167430400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:167414600-167433200	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:167414600-167440800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:167414600-167441000	Weak transcription	Psoas Muscle	Psoas
9	chr6:167414600-167448000	Weak transcription	Small Intestine	intestine
10	chr6:167414600-167450200	Weak transcription	Stomach Mucosa	stomach
11	chr6:167415200-167440800	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:167415400-167454000	Strong transcription	Fetal Thymus	thymus
13	chr6:167415400-167456600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:167416000-167444600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:167416200-167431800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:167416200-167437400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:167417200-167455400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:167417600-167443000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:167417600-167446000	Strong transcription	Dnd41	blood
20	chr6:167417600-167454800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:167417800-167455200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:167419200-167432800	Strong transcription	Fetal Muscle Leg	muscle
23	chr6:167419600-167431200	Weak transcription	Right Atrium	heart
24	chr6:167419600-167439000	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:167419600-167440000	Weak transcription	Fetal Heart	heart
26	chr6:167420000-167436400	Weak transcription	Colonic Mucosa	Colon
27	chr6:167420800-167447600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:167421000-167432400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:167422400-167433200	Strong transcription	Fetal Intestine Large	intestine
30	chr6:167423000-167446400	Strong transcription	HepG2	liver
31	chr6:167423000-167457600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:167423400-167430200	Strong transcription	GM12878-XiMat	blood
33	chr6:167423400-167446400	Strong transcription	Liver	Liver
34	chr6:167423400-167452200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:167423600-167430400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:167423600-167434200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:167424000-167430200	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr6:167424000-167442600	Strong transcription	K562	blood
39	chr6:167424200-167433400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:167424600-167430200	Strong transcription	Placenta	Placenta
41	chr6:167424600-167432800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:167424800-167442000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:167425000-167430200	Strong transcription	Left Ventricle	heart
44	chr6:167425000-167430400	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:167425000-167430400	Strong transcription	Ovary	ovary
46	chr6:167425000-167432800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:167425000-167432800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:167425000-167433000	Strong transcription	Fetal Stomach	stomach
49	chr6:167425000-167433200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:167425000-167433200	Strong transcription	Fetal Intestine Small	intestine

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