Variant report

Variant	rs4711800
Chromosome Location	chr6:44855880-44855881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1102211	0.90[AFR][1000 genomes]
rs16873005	0.83[AFR][1000 genomes]
rs1717286	0.81[AFR][1000 genomes]
rs2249560	0.85[AFR][1000 genomes]
rs3857587	0.85[AFR][1000 genomes]
rs486085	0.93[AFR][1000 genomes]
rs488961	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs585909	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs606553	0.86[AFR][1000 genomes]
rs620074	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs625943	0.92[AFR][1000 genomes]
rs672627	0.87[AFR][1000 genomes]
rs6925499	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44854600-44866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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