Variant report

Variant	rs486085
Chromosome Location	chr6:44868171-44868172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1102211	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16873005	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16873019	1.00[AMR][1000 genomes]
rs1717286	0.81[AFR][1000 genomes]
rs2249560	0.88[AFR][1000 genomes]
rs3857587	0.88[AFR][1000 genomes]
rs4711800	0.93[AFR][1000 genomes]
rs484267	1.00[AMR][1000 genomes]
rs488961	0.96[AFR][1000 genomes]
rs585909	0.96[AFR][1000 genomes]
rs606553	0.88[AFR][1000 genomes]
rs620074	0.93[AFR][1000 genomes]
rs625943	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs672627	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:44863600-44870400	Weak transcription	Aorta	Aorta
4	chr6:44864800-44888400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:44866400-44868600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:44866600-44869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:44866600-44879600	Weak transcription	Pancreas	Pancrea
8	chr6:44867800-44868800	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr6:44868000-44874600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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