Variant report

Variant	rs3857587
Chromosome Location	chr6:44884538-44884539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44878819..44880569-chr6:44884458..44887437,2	MCF-7	breast:
2	chr6:44879682..44885595-chr6:44885746..44891635,7	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1102211	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs1293597	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329708	1.00[MEX][hapmap]
rs1475533	1.00[MEX][hapmap]
rs1475534	1.00[MEX][hapmap]
rs16873005	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs2249560	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227820	1.00[ASN][1000 genomes]
rs227821	1.00[ASN][1000 genomes]
rs227822	1.00[ASN][1000 genomes]
rs227823	1.00[ASN][1000 genomes]
rs227825	1.00[ASN][1000 genomes]
rs227856	1.00[ASN][1000 genomes]
rs2461016	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35751658	1.00[ASN][1000 genomes]
rs4711800	0.85[AFR][1000 genomes]
rs4711808	1.00[MEX][hapmap]
rs4711811	1.00[MEX][hapmap]
rs4714835	1.00[MEX][hapmap]
rs481914	1.00[MEX][hapmap]
rs484267	0.86[ASW][hapmap];0.82[MKK][hapmap];0.81[YRI][hapmap]
rs486085	0.88[AFR][1000 genomes]
rs488961	0.88[AFR][1000 genomes]
rs491590	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504907	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508494	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520649	0.85[EUR][1000 genomes]
rs528158	1.00[MEX][hapmap]
rs539002	1.00[MEX][hapmap]
rs551817	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554682	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55884652	1.00[ASN][1000 genomes]
rs567297	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570778	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581216	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585909	0.88[AFR][1000 genomes]
rs606553	1.00[ASW][hapmap];0.91[LWK][hapmap];0.86[MKK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs613208	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613948	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620074	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs625595	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625943	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs626965	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641011	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641340	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660643	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs666652	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672098	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672627	0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs685327	1.00[MEX][hapmap]
rs688768	0.89[EUR][1000 genomes]
rs6925499	0.86[ASW][hapmap];0.81[YRI][hapmap]
rs73737872	1.00[ASN][1000 genomes]
rs9369527	1.00[MEX][hapmap]
rs9381356	1.00[MEX][hapmap]
rs9472429	1.00[MEX][hapmap]
rs9472430	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:44864800-44888400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:44873200-44888000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:44874800-44889400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:44875000-44888800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:44877800-44892800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:44879000-44888000	Weak transcription	HepG2	liver
9	chr6:44880600-44888000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:44881000-44894600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:44882400-44886400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:44883800-44886400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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