Variant report

Variant	rs9472429
Chromosome Location	chr6:45011305-45011306
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1023092	1.00[CEU][hapmap]
rs1102212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1159132	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1284956	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1284957	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1284958	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1284959	0.88[EUR][1000 genomes]
rs1284963	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1284970	0.88[EUR][1000 genomes]
rs1284971	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1284976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284978	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1284981	0.88[EUR][1000 genomes]
rs1284984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284985	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1284991	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1284994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284996	0.88[EUR][1000 genomes]
rs1284997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1284998	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1285001	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1285012	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1285015	0.88[EUR][1000 genomes]
rs1285016	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1285017	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1293582	1.00[CEU][hapmap]
rs1329708	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1329712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1360198	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1411150	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1475533	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs1475534	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs1536904	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1536906	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1548285	0.86[EUR][1000 genomes]
rs1576380	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1576381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1625102	0.88[EUR][1000 genomes]
rs1629619	0.88[EUR][1000 genomes]
rs1630758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1632504	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1748241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1748246	0.88[EUR][1000 genomes]
rs1797155	0.88[EUR][1000 genomes]
rs1797157	0.88[EUR][1000 genomes]
rs1797160	0.88[EUR][1000 genomes]
rs1797162	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2149872	1.00[CEU][hapmap]
rs2183295	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2249560	1.00[MEX][hapmap]
rs2396368	0.83[EUR][1000 genomes]
rs2396378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3857587	1.00[MEX][hapmap]
rs4711808	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs4711810	1.00[CEU][hapmap]
rs4711811	1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs4711812	0.88[EUR][1000 genomes]
rs4714831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4714835	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs480657	1.00[CEU][hapmap]
rs490515	1.00[CEU][hapmap]
rs508494	1.00[MEX][hapmap]
rs510167	1.00[CEU][hapmap]
rs519122	1.00[CEU][hapmap]
rs538857	1.00[CEU][hapmap]
rs540247	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs556352	1.00[CEU][hapmap]
rs55641	1.00[CEU][hapmap]
rs56000304	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs56051040	0.92[EUR][1000 genomes]
rs56142650	0.92[EUR][1000 genomes]
rs56218508	1.00[AFR][1000 genomes]
rs56300352	0.92[EUR][1000 genomes]
rs564286	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs581216	1.00[MEX][hapmap]
rs592240	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs603778	1.00[CEU][hapmap]
rs609571	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs622051	1.00[CEU][hapmap]
rs625782	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6458416	0.86[EUR][1000 genomes]
rs6458417	1.00[CEU][hapmap]
rs656463	0.85[CEU][hapmap]
rs662599	1.00[CEU][hapmap]
rs685327	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs686938	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6902685	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6903524	0.81[EUR][1000 genomes]
rs6912845	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs72857008	1.00[AFR][1000 genomes]
rs72857044	1.00[AFR][1000 genomes]
rs72857059	1.00[AFR][1000 genomes]
rs72857063	0.92[EUR][1000 genomes]
rs72857065	1.00[AFR][1000 genomes]
rs72857066	1.00[AFR][1000 genomes]
rs72858503	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72858507	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72865965	1.00[AFR][1000 genomes]
rs72865980	1.00[AFR][1000 genomes]
rs72867405	1.00[AFR][1000 genomes]
rs72867426	1.00[AFR][1000 genomes]
rs72867440	1.00[AFR][1000 genomes]
rs72867449	1.00[AFR][1000 genomes]
rs72867458	1.00[AFR][1000 genomes]
rs72867470	1.00[AFR][1000 genomes]
rs72867485	1.00[AFR][1000 genomes]
rs72869128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72869130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72869143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72870914	1.00[AFR][1000 genomes]
rs72870922	1.00[AFR][1000 genomes]
rs7739872	0.86[EUR][1000 genomes]
rs7750753	1.00[CEU][hapmap]
rs7763079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7775597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs857318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs857598	1.00[CEU][hapmap]
rs9357463	0.86[EUR][1000 genomes]
rs9357465	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9357468	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9369525	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9369527	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs9381355	0.80[EUR][1000 genomes]
rs9381356	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9381363	0.88[EUR][1000 genomes]
rs9395061	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9472430	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2762589	chr6:44982992-45044580	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1018962	chr6:44996714-45038038	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1024404	chr6:44996714-45039419	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45011200-45012600	Enhancers	HepG2	liver

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