Variant report

Variant	rs6903524
Chromosome Location	chr6:45016915-45016916
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45008781..45011238-chr6:45015698..45018079,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1102212	1.00[CEU][hapmap]
rs1284958	0.83[EUR][1000 genomes]
rs1284963	0.81[EUR][1000 genomes]
rs1284971	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1284976	0.81[EUR][1000 genomes]
rs1284977	0.81[EUR][1000 genomes]
rs1284984	0.81[EUR][1000 genomes]
rs1284994	0.81[EUR][1000 genomes]
rs1284997	0.90[EUR][1000 genomes]
rs1284998	0.86[EUR][1000 genomes]
rs1285016	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1329712	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1630758	0.81[EUR][1000 genomes]
rs1748241	0.86[EUR][1000 genomes]
rs1797162	0.81[EUR][1000 genomes]
rs2763135	0.88[EUR][1000 genomes]
rs4714831	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs56000304	0.83[EUR][1000 genomes]
rs56051040	0.88[EUR][1000 genomes]
rs56142650	0.88[EUR][1000 genomes]
rs56300352	0.88[EUR][1000 genomes]
rs72857063	0.83[EUR][1000 genomes]
rs72858503	0.88[EUR][1000 genomes]
rs72858507	0.88[EUR][1000 genomes]
rs72869128	0.90[EUR][1000 genomes]
rs72869130	0.90[EUR][1000 genomes]
rs72869143	0.90[EUR][1000 genomes]
rs7763079	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7775597	0.88[EUR][1000 genomes]
rs857318	1.00[CEU][hapmap]
rs9381356	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9472429	0.81[EUR][1000 genomes]
rs9472430	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2762589	chr6:44982992-45044580	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1018962	chr6:44996714-45038038	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1024404	chr6:44996714-45039419	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv885865	chr6:45012223-45102025	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45012200-45017000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:45012200-45022000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:45013800-45020000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:45016400-45018000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:45016400-45019200	Enhancers	Dnd41	blood
6	chr6:45016400-45019600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:45016600-45017600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:45016600-45017600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:45016600-45017600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:45016600-45018600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:45016600-45019000	Enhancers	HUVEC	blood vessel
12	chr6:45016800-45017400	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:45016800-45017600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:45016800-45017600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:45016800-45018000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:45016800-45018200	Enhancers	Primary T cells from cord blood	blood
17	chr6:45016800-45018200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:45016800-45018200	Enhancers	HepG2	liver
19	chr6:45016800-45018200	Enhancers	K562	blood
20	chr6:45016800-45018600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:45016800-45019000	Enhancers	HUES6 Cell Line	embryonic stem cell

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