Variant report

Variant	rs1748241
Chromosome Location	chr6:45162128-45162129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45160972..45165246-chr6:45178939..45182549,3	K562	blood:
2	chr6:45155462..45157708-chr6:45161468..45163917,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1284957	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1284958	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1284963	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1284971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1284976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1284977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1284984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1284994	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1284997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1284998	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1285016	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1329708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1329712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1536906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1576380	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1576381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1630758	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1797162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2396378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2763135	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4469289	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4520015	1.00[AFR][1000 genomes]
rs4714831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4714835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4714849	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs56000304	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs56051040	0.92[EUR][1000 genomes]
rs56142650	0.92[EUR][1000 genomes]
rs56218508	1.00[AFR][1000 genomes]
rs56300352	0.92[EUR][1000 genomes]
rs6903524	0.86[EUR][1000 genomes]
rs6908280	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6933742	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72857008	1.00[AFR][1000 genomes]
rs72857044	1.00[AFR][1000 genomes]
rs72857059	1.00[AFR][1000 genomes]
rs72857063	0.97[EUR][1000 genomes]
rs72857065	1.00[AFR][1000 genomes]
rs72857066	1.00[AFR][1000 genomes]
rs72858503	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72858507	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72858522	1.00[AFR][1000 genomes]
rs72858523	1.00[AFR][1000 genomes]
rs72858529	1.00[AFR][1000 genomes]
rs72858566	1.00[AFR][1000 genomes]
rs72867405	1.00[AFR][1000 genomes]
rs72867426	1.00[AFR][1000 genomes]
rs72867440	1.00[AFR][1000 genomes]
rs72867449	1.00[AFR][1000 genomes]
rs72867458	1.00[AFR][1000 genomes]
rs72867470	1.00[AFR][1000 genomes]
rs72867485	1.00[AFR][1000 genomes]
rs72869128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72869130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72869143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72870914	1.00[AFR][1000 genomes]
rs72870922	1.00[AFR][1000 genomes]
rs7756721	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7763079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7775597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9296454	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9381356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9395061	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9472429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9472430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472459	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45153800-45163000	Weak transcription	Psoas Muscle	Psoas
2	chr6:45155400-45163000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:45159600-45163800	Weak transcription	Liver	Liver
4	chr6:45160000-45167000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:45160200-45166000	Weak transcription	HepG2	liver
6	chr6:45160600-45167000	Weak transcription	Fetal Intestine Large	intestine
7	chr6:45162000-45171800	Enhancers	Dnd41	blood

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