Variant report

Variant	rs4520015
Chromosome Location	chr6:45286125-45286126
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45285385..45288934-chr6:45291924..45295475,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1284957	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1284958	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1284963	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1284971	1.00[AFR][1000 genomes]
rs1284976	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1284977	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1284984	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1284994	0.89[EUR][1000 genomes]
rs1284997	1.00[AFR][1000 genomes]
rs1285016	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1630758	0.89[EUR][1000 genomes]
rs1748241	1.00[AFR][1000 genomes]
rs1797162	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2763135	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4296887	0.83[EUR][1000 genomes]
rs4469289	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4714849	1.00[AFR][1000 genomes]
rs56000304	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56051040	0.81[EUR][1000 genomes]
rs56142650	0.81[EUR][1000 genomes]
rs56218508	1.00[AFR][1000 genomes]
rs56300352	0.81[EUR][1000 genomes]
rs6908280	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6933742	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72857008	1.00[AFR][1000 genomes]
rs72857044	1.00[AFR][1000 genomes]
rs72857059	1.00[AFR][1000 genomes]
rs72857063	0.81[EUR][1000 genomes]
rs72857065	1.00[AFR][1000 genomes]
rs72857066	1.00[AFR][1000 genomes]
rs72858503	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72858507	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72858522	1.00[AFR][1000 genomes]
rs72858523	1.00[AFR][1000 genomes]
rs72858529	1.00[AFR][1000 genomes]
rs72858566	1.00[AFR][1000 genomes]
rs72869143	1.00[AFR][1000 genomes]
rs72870914	1.00[AFR][1000 genomes]
rs72870922	1.00[AFR][1000 genomes]
rs7756721	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9296454	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9349320	0.83[EUR][1000 genomes]
rs9395096	0.88[EUR][1000 genomes]
rs9463084	0.88[EUR][1000 genomes]
rs9472459	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45275200-45290200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:45276800-45290400	Weak transcription	Fetal Heart	heart
3	chr6:45278600-45288000	Weak transcription	Left Ventricle	heart
4	chr6:45279000-45288400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:45280000-45290600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:45280600-45289200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:45280600-45290400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:45281000-45288200	Weak transcription	Dnd41	blood
9	chr6:45281200-45288200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:45285600-45290200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:45285600-45295800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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