Variant report

Variant	rs4296887
Chromosome Location	chr6:45276151-45276152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1284956	0.88[EUR][1000 genomes]
rs1284957	0.80[EUR][1000 genomes]
rs1284959	0.94[EUR][1000 genomes]
rs1284963	0.83[EUR][1000 genomes]
rs1284970	0.94[EUR][1000 genomes]
rs1284976	0.83[EUR][1000 genomes]
rs1284977	0.83[EUR][1000 genomes]
rs1284978	0.91[EUR][1000 genomes]
rs1284981	0.94[EUR][1000 genomes]
rs1284984	0.83[EUR][1000 genomes]
rs1284985	0.94[EUR][1000 genomes]
rs1284994	0.83[EUR][1000 genomes]
rs1284996	0.94[EUR][1000 genomes]
rs1285001	0.94[EUR][1000 genomes]
rs1285012	0.94[EUR][1000 genomes]
rs1285015	0.94[EUR][1000 genomes]
rs1285017	0.94[EUR][1000 genomes]
rs1625102	0.94[EUR][1000 genomes]
rs1629619	0.94[EUR][1000 genomes]
rs1630758	0.83[EUR][1000 genomes]
rs1632504	0.94[EUR][1000 genomes]
rs1748246	0.94[EUR][1000 genomes]
rs1797155	0.94[EUR][1000 genomes]
rs1797160	0.94[EUR][1000 genomes]
rs1797162	0.83[EUR][1000 genomes]
rs4278013	0.94[EUR][1000 genomes]
rs4323299	0.94[EUR][1000 genomes]
rs4437465	0.94[EUR][1000 genomes]
rs4452642	0.94[EUR][1000 genomes]
rs4520015	0.83[EUR][1000 genomes]
rs6908280	0.83[EUR][1000 genomes]
rs6932726	0.91[EUR][1000 genomes]
rs6933742	0.83[EUR][1000 genomes]
rs7753900	0.94[EUR][1000 genomes]
rs7756721	0.83[EUR][1000 genomes]
rs7765383	0.88[EUR][1000 genomes]
rs9296454	0.83[EUR][1000 genomes]
rs9349320	1.00[EUR][1000 genomes]
rs9369554	0.88[EUR][1000 genomes]
rs9369557	0.91[EUR][1000 genomes]
rs9395096	0.94[EUR][1000 genomes]
rs9463084	0.94[EUR][1000 genomes]
rs9472459	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45249800-45278200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:45274000-45277800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:45274600-45277600	Weak transcription	Adipose Nuclei	Adipose
4	chr6:45274800-45276600	Weak transcription	Dnd41	blood
5	chr6:45275200-45277600	Weak transcription	Fetal Stomach	stomach
6	chr6:45275200-45290200	Weak transcription	Fetal Intestine Large	intestine
7	chr6:45275600-45283000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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