Variant report

Variant	rs1285017
Chromosome Location	chr6:45167289-45167290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MBD4	chr6:45167274-45167926	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:45166970-45168751	HepG2	liver:	n/a	chr6:45167947-45167963 chr6:45168678-45168694
3	MYBL2	chr6:45167171-45167921	HepG2	liver:	n/a	n/a
4	NFIC	chr6:45167144-45167965	HepG2	liver:	n/a	n/a
5	FOXA1	chr6:45167287-45167845	HepG2	liver:	n/a	n/a
6	EP300	chr6:45167261-45167591	GM12878	blood:	n/a	n/a
7	TEAD4	chr6:45167173-45167925	HepG2	liver:	n/a	n/a
8	MYBL2	chr6:45167240-45167783	HepG2	liver:	n/a	n/a
9	SP1	chr6:45167253-45167773	HepG2	liver:	n/a	n/a
10	ZNF384	chr6:45167229-45167657	GM12878	blood:	n/a	n/a
11	FOXA1	chr6:45167218-45167881	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MIR586	TF binding region

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1023092	1.00[CEU][hapmap]
rs1159132	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1284956	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1284957	0.86[EUR][1000 genomes]
rs1284958	0.81[EUR][1000 genomes]
rs1284959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284963	0.88[EUR][1000 genomes]
rs1284970	1.00[EUR][1000 genomes]
rs1284976	0.88[EUR][1000 genomes]
rs1284977	0.88[EUR][1000 genomes]
rs1284978	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1284981	1.00[EUR][1000 genomes]
rs1284984	0.88[EUR][1000 genomes]
rs1284985	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1284991	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1284994	0.88[EUR][1000 genomes]
rs1284996	1.00[EUR][1000 genomes]
rs1285001	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1285012	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1285015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1285016	0.81[EUR][1000 genomes]
rs1329708	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1360198	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1411150	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1475533	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1475534	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1536906	0.85[EUR][1000 genomes]
rs1548285	0.97[EUR][1000 genomes]
rs1576380	0.85[EUR][1000 genomes]
rs1576381	0.82[EUR][1000 genomes]
rs1625102	1.00[EUR][1000 genomes]
rs1629619	1.00[EUR][1000 genomes]
rs1630758	0.88[EUR][1000 genomes]
rs1632504	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1748246	1.00[EUR][1000 genomes]
rs1797155	1.00[EUR][1000 genomes]
rs1797157	1.00[EUR][1000 genomes]
rs1797160	1.00[EUR][1000 genomes]
rs1797162	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2149872	1.00[CEU][hapmap]
rs2183295	0.97[EUR][1000 genomes]
rs2396378	0.84[EUR][1000 genomes]
rs2763135	0.81[EUR][1000 genomes]
rs4278013	0.88[EUR][1000 genomes]
rs4296887	0.94[EUR][1000 genomes]
rs4323299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4437465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4452642	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4469289	0.81[EUR][1000 genomes]
rs4711810	1.00[CEU][hapmap]
rs4711811	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4711812	1.00[EUR][1000 genomes]
rs4714835	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs56000304	0.81[EUR][1000 genomes]
rs56051040	0.81[EUR][1000 genomes]
rs56142650	0.81[EUR][1000 genomes]
rs56300352	0.81[EUR][1000 genomes]
rs6458416	0.97[EUR][1000 genomes]
rs6458417	1.00[CEU][hapmap]
rs6908280	0.88[EUR][1000 genomes]
rs6912845	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6932726	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6933742	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs72857063	0.81[EUR][1000 genomes]
rs72858503	0.81[EUR][1000 genomes]
rs72858507	0.81[EUR][1000 genomes]
rs7750753	1.00[CEU][hapmap]
rs7753900	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756721	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7765383	0.94[EUR][1000 genomes]
rs9296454	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs9349320	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9357465	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9357468	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9369527	0.97[EUR][1000 genomes]
rs9369554	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9369557	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9381363	1.00[EUR][1000 genomes]
rs9395061	0.82[CEU][hapmap]
rs9395096	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9463084	0.87[EUR][1000 genomes]
rs9472429	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9472459	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45162000-45171800	Enhancers	Dnd41	blood
2	chr6:45166400-45167800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:45167000-45167400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:45167000-45167800	Enhancers	Fetal Intestine Small	intestine
5	chr6:45167000-45168200	Enhancers	Fetal Intestine Large	intestine
6	chr6:45167000-45168800	Enhancers	Liver	Liver
7	chr6:45167200-45167800	Enhancers	Primary T cells from cord blood	blood
8	chr6:45167200-45167800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:45167200-45168400	Flanking Active TSS	HepG2	liver
10	chr6:45167200-45168600	Enhancers	Pancreatic Islets	Pancreatic Islet

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