Variant report

Variant	rs4452642
Chromosome Location	chr6:45247901-45247902
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1023092	1.00[CEU][hapmap]
rs1284956	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1284957	0.86[EUR][1000 genomes]
rs1284958	0.81[EUR][1000 genomes]
rs1284959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284963	0.88[EUR][1000 genomes]
rs1284970	1.00[EUR][1000 genomes]
rs1284971	1.00[MEX][hapmap]
rs1284976	0.88[EUR][1000 genomes]
rs1284977	0.88[EUR][1000 genomes]
rs1284978	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1284981	1.00[EUR][1000 genomes]
rs1284984	0.88[EUR][1000 genomes]
rs1284985	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1284991	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1284994	0.88[EUR][1000 genomes]
rs1284996	1.00[EUR][1000 genomes]
rs1285001	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1285012	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1285015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1285016	0.81[EUR][1000 genomes]
rs1285017	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1625102	1.00[EUR][1000 genomes]
rs1629619	1.00[EUR][1000 genomes]
rs1630758	0.88[EUR][1000 genomes]
rs1632504	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1748246	1.00[EUR][1000 genomes]
rs1797155	1.00[EUR][1000 genomes]
rs1797157	1.00[EUR][1000 genomes]
rs1797160	1.00[EUR][1000 genomes]
rs1797162	1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs2763135	0.81[EUR][1000 genomes]
rs2819856	0.82[CEU][hapmap]
rs4278013	0.88[EUR][1000 genomes]
rs4296887	0.94[EUR][1000 genomes]
rs4323299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4437465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4469289	1.00[MEX][hapmap];0.81[EUR][1000 genomes]
rs4711812	1.00[EUR][1000 genomes]
rs56000304	0.81[EUR][1000 genomes]
rs56051040	0.81[EUR][1000 genomes]
rs56142650	0.81[EUR][1000 genomes]
rs56300352	0.81[EUR][1000 genomes]
rs6908280	0.88[EUR][1000 genomes]
rs6932726	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6933742	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs72857063	0.81[EUR][1000 genomes]
rs72858503	0.81[EUR][1000 genomes]
rs72858507	0.81[EUR][1000 genomes]
rs7750753	1.00[CEU][hapmap]
rs7753900	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756721	1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs7765383	0.94[EUR][1000 genomes]
rs9296454	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9349320	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9357468	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9369554	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9369557	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9381363	1.00[EUR][1000 genomes]
rs9395096	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9463084	0.87[EUR][1000 genomes]
rs9472459	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2763550	chr6:45186825-45275593	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45225600-45248800	Weak transcription	Ovary	ovary
2	chr6:45239200-45248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:45239200-45248800	Weak transcription	Aorta	Aorta
4	chr6:45239400-45248800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:45239800-45248800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:45247600-45248800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:45247600-45248800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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