Variant report

Variant	rs1625102
Chromosome Location	chr4:150837584-150837585
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1159132	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1284956	0.94[EUR][1000 genomes]
rs1284957	0.86[EUR][1000 genomes]
rs1284958	0.81[EUR][1000 genomes]
rs1284959	1.00[EUR][1000 genomes]
rs1284963	0.88[EUR][1000 genomes]
rs1284970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284976	0.88[EUR][1000 genomes]
rs1284977	0.88[EUR][1000 genomes]
rs1284978	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1284981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284984	0.88[EUR][1000 genomes]
rs1284985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284994	0.88[EUR][1000 genomes]
rs1284996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1285001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1285012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1285015	1.00[EUR][1000 genomes]
rs1285016	0.81[EUR][1000 genomes]
rs1285017	1.00[EUR][1000 genomes]
rs1329708	0.85[EUR][1000 genomes]
rs1360198	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1475533	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1475534	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1536904	0.85[EUR][1000 genomes]
rs1536906	0.85[EUR][1000 genomes]
rs1548285	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1576380	0.85[EUR][1000 genomes]
rs1576381	0.82[EUR][1000 genomes]
rs1629619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1630758	0.88[EUR][1000 genomes]
rs1632504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1748246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797162	0.88[EUR][1000 genomes]
rs2183295	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2396368	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2396378	0.84[EUR][1000 genomes]
rs2763135	0.81[EUR][1000 genomes]
rs4278013	0.88[EUR][1000 genomes]
rs4296887	0.94[EUR][1000 genomes]
rs4323299	1.00[EUR][1000 genomes]
rs4437465	1.00[EUR][1000 genomes]
rs4452642	1.00[EUR][1000 genomes]
rs4469289	0.81[EUR][1000 genomes]
rs4711808	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4711811	1.00[EUR][1000 genomes]
rs4711812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4714835	0.85[EUR][1000 genomes]
rs56000304	0.81[EUR][1000 genomes]
rs56051040	0.81[EUR][1000 genomes]
rs56142650	0.81[EUR][1000 genomes]
rs56300352	0.81[EUR][1000 genomes]
rs6458416	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6902685	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6908280	0.88[EUR][1000 genomes]
rs6912845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932726	0.97[EUR][1000 genomes]
rs6933742	0.88[EUR][1000 genomes]
rs72857063	0.81[EUR][1000 genomes]
rs72858503	0.81[EUR][1000 genomes]
rs72858507	0.81[EUR][1000 genomes]
rs7739872	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7753900	1.00[EUR][1000 genomes]
rs7756721	0.88[EUR][1000 genomes]
rs7765383	0.94[EUR][1000 genomes]
rs9296454	0.88[EUR][1000 genomes]
rs9349320	0.94[EUR][1000 genomes]
rs9357463	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9357465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9369525	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9369527	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9369554	0.94[EUR][1000 genomes]
rs9369557	0.97[EUR][1000 genomes]
rs9381355	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9381363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395096	0.87[EUR][1000 genomes]
rs9463084	0.87[EUR][1000 genomes]
rs9472429	0.88[EUR][1000 genomes]
rs9472459	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150837200-150841400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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