Variant report

Variant	rs1475534
Chromosome Location	chr6:44988149-44988150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44987589..44991130-chr6:44992558..44996333,3	K562	blood:
2	chr6:44987108..44989743-chr6:44993654..44995647,2	K562	blood:

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1023092	1.00[CEU][hapmap]
rs1159132	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284956	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1284957	0.83[EUR][1000 genomes]
rs1284959	0.97[EUR][1000 genomes]
rs1284963	0.86[EUR][1000 genomes]
rs1284970	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1284971	1.00[MEX][hapmap]
rs1284976	0.86[EUR][1000 genomes]
rs1284977	0.86[EUR][1000 genomes]
rs1284978	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1284981	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1284984	0.86[EUR][1000 genomes]
rs1284985	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1284991	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1284994	0.86[EUR][1000 genomes]
rs1284996	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1285001	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1285012	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1285015	0.97[EUR][1000 genomes]
rs1285017	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1293582	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1329708	1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs1360198	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411150	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1475533	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1536904	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1536906	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1548285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1576380	0.88[EUR][1000 genomes]
rs1576381	0.85[EUR][1000 genomes]
rs1625102	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1629619	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1630758	0.86[EUR][1000 genomes]
rs1632504	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1640767	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1748246	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1797155	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1797157	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1797160	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1797162	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs2149872	1.00[CEU][hapmap]
rs2183295	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2249560	1.00[MEX][hapmap]
rs2396368	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2396378	0.81[EUR][1000 genomes]
rs2461017	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3857587	1.00[MEX][hapmap]
rs3997494	0.84[EUR][1000 genomes]
rs4711808	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4711810	1.00[CEU][hapmap]
rs4711811	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs4711812	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4714835	1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs480657	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs481914	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs482878	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs490515	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs508494	1.00[MEX][hapmap]
rs510167	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs519122	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs522282	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs527145	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs528158	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs538857	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs539002	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs540247	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs542910	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs549243	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs551338	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs551955	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs553811	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs556352	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55641	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs557425	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs560765	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs563708	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs564286	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs569999	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs581216	1.00[MEX][hapmap]
rs588813	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs589285	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs592240	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs603778	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs604040	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs604486	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs604873	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs609571	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs622051	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs625782	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6458416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6458417	1.00[CEU][hapmap]
rs652851	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs655669	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs656463	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs662599	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs669087	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs672098	1.00[MEX][hapmap]
rs685327	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs686938	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6902685	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912845	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7739872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750753	1.00[CEU][hapmap]
rs857598	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs857604	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9357463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357465	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9357468	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9369525	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9369527	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9381355	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9381356	1.00[MEX][hapmap]
rs9381363	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9395061	1.00[CEU][hapmap]
rs9472429	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs9472430	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv2757164	chr6:44953758-44989519	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv2762589	chr6:44982992-45044580	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44966400-44993600	Weak transcription	HepG2	liver
2	chr6:44970800-44988600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:44970800-44989000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:44971400-44988800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:44974800-45004600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:44977200-44988800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:44977600-44993800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:44978600-44988600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:44980600-44989000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:44981600-44994800	Weak transcription	Aorta	Aorta
11	chr6:44981600-44994800	Weak transcription	Pancreas	Pancrea
12	chr6:44981800-44988200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:44981800-44988800	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:44982600-44989000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:44983200-44988200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:44986200-44988800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:44987600-44989000	Weak transcription	Dnd41	blood

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