Variant report

Variant	rs662599
Chromosome Location	chr6:44824650-44824651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1159132	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1283936	1.00[AMR][1000 genomes]
rs1293582	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1329708	1.00[CEU][hapmap]
rs1360198	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1411150	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1475533	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1475534	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1536904	0.85[CEU][hapmap]
rs1536906	0.85[CEU][hapmap]
rs1548285	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1640767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1767799	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2149872	1.00[CEU][hapmap]
rs2183295	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs227806	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs227814	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227824	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227828	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227829	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227834	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227842	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227846	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227856	0.83[EUR][1000 genomes]
rs2396368	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2461017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3997494	0.97[EUR][1000 genomes]
rs4711808	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4711810	1.00[CEU][hapmap]
rs4711811	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4714835	1.00[CEU][hapmap]
rs471765	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs480657	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs481914	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs482878	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs490515	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs497557	1.00[AMR][1000 genomes]
rs510167	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs519122	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs522282	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs527145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs528158	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs538857	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs539002	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs540247	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs542910	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs549243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs551338	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs551955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs553811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs556352	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55641	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs557425	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs560765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs563708	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs564286	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs569999	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs588813	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs589285	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs592240	0.85[CEU][hapmap]
rs603778	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs604040	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs604486	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs604873	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs609571	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs622051	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs625782	0.85[CEU][hapmap]
rs6458416	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6458417	1.00[CEU][hapmap]
rs649617	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs652851	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs655669	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs656463	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs669087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs685327	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs686938	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs6902685	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6912845	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7739872	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs857598	1.00[CEU][hapmap]
rs857604	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9357463	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9357465	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9369525	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9369527	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9381355	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9395061	0.82[CEU][hapmap]
rs9472429	1.00[CEU][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44818000-44832200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:44818400-44825800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:44818400-44826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:44820400-44832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:44821600-44824800	Enhancers	Primary T cells from cord blood	blood
6	chr6:44821600-44824800	Enhancers	Fetal Intestine Small	intestine
7	chr6:44822600-44828400	Enhancers	Fetal Lung	lung
8	chr6:44822800-44824800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:44822800-44824800	Enhancers	Fetal Kidney	kidney
10	chr6:44823000-44826200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:44823000-44829600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:44823200-44828800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:44823400-44824800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:44823400-44826600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:44823600-44827200	Enhancers	Brain Germinal Matrix	brain
16	chr6:44823600-44828000	Weak transcription	HSMMtube	muscle
17	chr6:44823800-44824800	Enhancers	NHLF	lung
18	chr6:44823800-44836600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:44824400-44824800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:44824400-44825600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:44824400-44826400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:44824400-44827200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:44824600-44825200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:44824600-44825200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:44824600-44825600	Weak transcription	Fetal Brain Female	brain
26	chr6:44824600-44825800	Weak transcription	Fetal Brain Male	brain
27	chr6:44824600-44825800	Weak transcription	Fetal Intestine Large	intestine
28	chr6:44824600-44826000	Weak transcription	Fetal Heart	heart
29	chr6:44824600-44826400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:44824600-44833200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:44824600-44833200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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