Variant report

Variant	rs227806
Chromosome Location	chr6:44665643-44665644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44640493..44642311-chr6:44662709..44665679,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1283936	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1293582	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1640767	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1767799	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227814	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227824	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227828	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227829	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227834	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227842	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227846	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2461017	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3997494	0.90[EUR][1000 genomes]
rs471765	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs480657	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs481914	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs482878	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs490515	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs497557	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs527145	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs528158	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs539002	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs549243	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs551338	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs551955	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs553811	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs557425	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs560765	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs563708	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs569999	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs588813	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs589285	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs604040	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs604486	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs604873	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs649617	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs655669	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs662599	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs857604	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44657000-44667200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:44660000-44666400	Weak transcription	Right Atrium	heart
3	chr6:44662600-44669600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:44663600-44665800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:44663600-44665800	Enhancers	NHDF-Ad	bronchial
6	chr6:44664400-44667400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:44664400-44667400	Enhancers	Fetal Muscle Leg	muscle
8	chr6:44664600-44668600	Weak transcription	NH-A	brain
9	chr6:44664600-44668800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:44664600-44669800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:44664800-44666800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:44665000-44665800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:44665600-44666600	Weak transcription	HSMM	muscle
14	chr6:44665600-44673800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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