Variant report

Variant	rs3997494
Chromosome Location	chr6:44793404-44793405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44627162..44628887-chr6:44792962..44795386,2	MCF-7	breast:
2	chr6:44791441..44794035-chr6:44828458..44830596,2	K562	blood:
3	chr6:44788604..44791132-chr6:44792129..44794044,2	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1159132	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1293466	0.84[AFR][1000 genomes]
rs1293582	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1296044	0.84[AFR][1000 genomes]
rs1299349	0.84[AFR][1000 genomes]
rs1299350	0.84[AFR][1000 genomes]
rs1329708	1.00[CEU][hapmap]
rs1360198	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1475533	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1475534	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1536904	0.85[CEU][hapmap]
rs1536906	0.85[CEU][hapmap]
rs1548285	0.84[EUR][1000 genomes]
rs1640767	0.97[EUR][1000 genomes]
rs16873022	1.00[YRI][hapmap]
rs1767799	0.87[EUR][1000 genomes]
rs2183295	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs227806	0.90[EUR][1000 genomes]
rs227814	1.00[EUR][1000 genomes]
rs227824	1.00[EUR][1000 genomes]
rs227828	1.00[EUR][1000 genomes]
rs227829	1.00[EUR][1000 genomes]
rs227834	1.00[EUR][1000 genomes]
rs227842	1.00[EUR][1000 genomes]
rs227846	1.00[EUR][1000 genomes]
rs227856	0.86[EUR][1000 genomes]
rs2396368	0.81[EUR][1000 genomes]
rs2461017	0.97[EUR][1000 genomes]
rs4711808	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs471765	0.87[EUR][1000 genomes]
rs480657	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs481914	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs482878	1.00[EUR][1000 genomes]
rs486081	0.82[YRI][hapmap]
rs490515	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs491548	0.87[YRI][hapmap]
rs505772	1.00[YRI][hapmap]
rs510167	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs511167	1.00[YRI][hapmap]
rs512747	1.00[YRI][hapmap]
rs519122	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs522282	0.90[EUR][1000 genomes]
rs527145	0.97[EUR][1000 genomes]
rs528158	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs532415	1.00[YRI][hapmap]
rs538857	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs538864	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs539002	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs540247	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs542910	0.90[EUR][1000 genomes]
rs549243	0.97[EUR][1000 genomes]
rs551338	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs551955	0.97[EUR][1000 genomes]
rs553811	0.97[EUR][1000 genomes]
rs556352	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs55641	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs557425	1.00[EUR][1000 genomes]
rs560765	0.97[EUR][1000 genomes]
rs563708	1.00[EUR][1000 genomes]
rs564286	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs569999	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs588291	1.00[YRI][hapmap]
rs588813	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs589067	0.83[YRI][hapmap]
rs589285	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs592240	0.85[CEU][hapmap]
rs603778	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs604040	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs604486	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs604511	0.82[YRI][hapmap]
rs604873	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs609243	0.87[YRI][hapmap]
rs609571	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs620222	0.82[YRI][hapmap]
rs622051	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs625782	0.85[CEU][hapmap]
rs637680	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs644060	0.87[YRI][hapmap]
rs6458416	0.84[EUR][1000 genomes]
rs647239	0.87[YRI][hapmap]
rs649617	1.00[EUR][1000 genomes]
rs650842	0.87[YRI][hapmap]
rs652851	0.90[EUR][1000 genomes]
rs655669	1.00[EUR][1000 genomes]
rs656463	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs662599	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs669087	0.97[EUR][1000 genomes]
rs683225	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs685327	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs686938	0.82[CEU][hapmap]
rs6902685	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7739872	0.84[EUR][1000 genomes]
rs857598	1.00[CEU][hapmap]
rs857604	1.00[EUR][1000 genomes]
rs9357463	0.84[EUR][1000 genomes]
rs9369525	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9369527	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842105	chr6:44783457-44798701	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44777400-44796600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:44779600-44796200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44779600-44796600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:44779600-44796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:44779600-44796800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:44780000-44798400	Weak transcription	Dnd41	blood
7	chr6:44785200-44795200	Weak transcription	Aorta	Aorta
8	chr6:44785200-44796800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:44785800-44796400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:44786200-44797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:44789200-44794600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:44789200-44796800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:44790400-44797200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:44791000-44793600	Weak transcription	Fetal Stomach	stomach
15	chr6:44791000-44805600	Weak transcription	Ovary	ovary
16	chr6:44791200-44796400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:44791200-44799000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:44791800-44794200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:44792000-44811600	Weak transcription	Pancreas	Pancrea
20	chr6:44792200-44796600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:44792400-44793800	Enhancers	Fetal Intestine Large	intestine
22	chr6:44792400-44796800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:44792600-44796200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:44792800-44796600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:44792800-44796800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:44792800-44797000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:44792800-44797200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:44793400-44797200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:44793400-44798000	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links