Variant report

Variant	rs227856
Chromosome Location	chr6:44703442-44703443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44701864..44704579-chr6:44705649..44708324,2	K562	blood:
2	chr6:44702578..44705568-chr6:44706888..44709805,2	MCF-7	breast:
3	chr6:44639630..44642555-chr6:44702558..44704571,3	MCF-7	breast:
4	chr6:44642016..44642706-chr6:44703078..44703822,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1102212	0.85[AMR][1000 genomes]
rs1283921	1.00[ASN][1000 genomes]
rs1283922	1.00[ASN][1000 genomes]
rs1283924	1.00[ASN][1000 genomes]
rs1293582	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs1293597	1.00[ASN][1000 genomes]
rs1296351	1.00[ASN][1000 genomes]
rs1298942	1.00[ASN][1000 genomes]
rs1640767	0.83[EUR][1000 genomes]
rs17335164	1.00[ASN][1000 genomes]
rs190137	1.00[ASN][1000 genomes]
rs2249560	1.00[ASN][1000 genomes]
rs227804	1.00[ASN][1000 genomes]
rs227805	1.00[ASN][1000 genomes]
rs227807	1.00[ASN][1000 genomes]
rs227809	1.00[ASN][1000 genomes]
rs227810	1.00[ASN][1000 genomes]
rs227811	1.00[ASN][1000 genomes]
rs227814	0.86[EUR][1000 genomes]
rs227815	1.00[ASN][1000 genomes]
rs227816	1.00[ASN][1000 genomes]
rs227820	1.00[ASN][1000 genomes]
rs227821	1.00[ASN][1000 genomes]
rs227822	1.00[ASN][1000 genomes]
rs227823	1.00[ASN][1000 genomes]
rs227824	0.86[EUR][1000 genomes]
rs227825	1.00[ASN][1000 genomes]
rs227828	0.86[EUR][1000 genomes]
rs227829	0.86[EUR][1000 genomes]
rs227834	0.86[EUR][1000 genomes]
rs227842	0.86[EUR][1000 genomes]
rs227846	0.86[EUR][1000 genomes]
rs2461016	1.00[ASN][1000 genomes]
rs2461017	0.83[EUR][1000 genomes]
rs3857587	1.00[ASN][1000 genomes]
rs3997494	0.86[EUR][1000 genomes]
rs480657	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs481914	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs482878	0.86[EUR][1000 genomes]
rs489757	1.00[ASN][1000 genomes]
rs490515	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs491590	1.00[ASN][1000 genomes]
rs504907	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs508494	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs510167	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs519122	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs527145	0.83[EUR][1000 genomes]
rs528158	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs538857	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs539002	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs545441	1.00[ASN][1000 genomes]
rs549243	0.83[EUR][1000 genomes]
rs551338	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs551817	1.00[ASN][1000 genomes]
rs551955	0.83[EUR][1000 genomes]
rs552919	1.00[ASN][1000 genomes]
rs552972	1.00[ASN][1000 genomes]
rs553811	0.83[EUR][1000 genomes]
rs554682	1.00[ASN][1000 genomes]
rs55641	1.00[CEU][hapmap]
rs557425	0.86[EUR][1000 genomes]
rs560765	0.83[EUR][1000 genomes]
rs563708	0.86[EUR][1000 genomes]
rs567297	1.00[ASN][1000 genomes]
rs569999	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs570778	1.00[ASN][1000 genomes]
rs581216	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs588813	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs589285	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs603778	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs604040	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs604486	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs604873	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs613208	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs613948	1.00[ASN][1000 genomes]
rs622051	0.83[EUR][1000 genomes]
rs625595	1.00[ASN][1000 genomes]
rs626965	1.00[ASN][1000 genomes]
rs631320	1.00[ASN][1000 genomes]
rs641011	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs641340	1.00[ASN][1000 genomes]
rs649617	0.86[EUR][1000 genomes]
rs655669	0.86[EUR][1000 genomes]
rs660643	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs662599	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs666652	1.00[ASN][1000 genomes]
rs669087	0.83[EUR][1000 genomes]
rs672098	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs857318	0.85[AMR][1000 genomes]
rs857604	0.86[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44695800-44703600	Weak transcription	Esophagus	oesophagus
2	chr6:44696000-44706000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:44697800-44704200	Enhancers	Colon Smooth Muscle	Colon
4	chr6:44698200-44703800	Enhancers	Placenta	Placenta
5	chr6:44701000-44704000	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:44701000-44704600	Enhancers	Fetal Stomach	stomach
7	chr6:44701600-44705800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:44701800-44704000	Enhancers	Fetal Thymus	thymus
9	chr6:44702000-44705600	Weak transcription	Fetal Lung	lung
10	chr6:44702200-44705600	Weak transcription	Adipose Nuclei	Adipose
11	chr6:44702400-44704000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:44702400-44704200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:44702400-44704800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:44702600-44704000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:44702800-44703600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:44702800-44703600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr6:44702800-44703600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:44702800-44703800	Flanking Active TSS	GM12878-XiMat	blood
19	chr6:44703000-44704000	Enhancers	HMEC	breast
20	chr6:44703000-44704000	Enhancers	NHEK	skin
21	chr6:44703200-44703600	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr6:44703200-44704000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:44703200-44705400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:44703400-44703600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:44703400-44703600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:44703400-44703600	Enhancers	Rectal Mucosa Donor 29	rectum

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