Variant report

Variant	rs227807
Chromosome Location	chr6:44666745-44666746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1283921	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283922	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283924	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293597	1.00[ASN][1000 genomes]
rs1296351	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1298942	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17335164	1.00[ASN][1000 genomes]
rs1767800	0.85[EUR][1000 genomes]
rs190137	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227804	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227805	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227809	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227810	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227811	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227815	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227816	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227820	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227821	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227822	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227823	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227825	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227856	1.00[ASN][1000 genomes]
rs2461016	1.00[ASN][1000 genomes]
rs2817118	0.85[EUR][1000 genomes]
rs489448	0.85[EUR][1000 genomes]
rs489757	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491590	1.00[ASN][1000 genomes]
rs504907	1.00[ASN][1000 genomes]
rs545441	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546936	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs551817	1.00[ASN][1000 genomes]
rs552919	1.00[ASN][1000 genomes]
rs552972	1.00[ASN][1000 genomes]
rs554682	1.00[ASN][1000 genomes]
rs567297	1.00[ASN][1000 genomes]
rs570778	1.00[ASN][1000 genomes]
rs613208	1.00[ASN][1000 genomes]
rs613948	1.00[ASN][1000 genomes]
rs625595	1.00[ASN][1000 genomes]
rs626965	1.00[ASN][1000 genomes]
rs631320	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641011	1.00[ASN][1000 genomes]
rs641340	1.00[ASN][1000 genomes]
rs666652	1.00[ASN][1000 genomes]
rs672098	1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44657000-44667200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:44662600-44669600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:44664400-44667400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:44664400-44667400	Enhancers	Fetal Muscle Leg	muscle
5	chr6:44664600-44668600	Weak transcription	NH-A	brain
6	chr6:44664600-44668800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:44664600-44669800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:44664800-44666800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:44665600-44673800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:44665800-44666800	Weak transcription	NHDF-Ad	bronchial
11	chr6:44665800-44668800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:44666400-44667400	Enhancers	Colon Smooth Muscle	Colon
13	chr6:44666600-44667000	Weak transcription	Right Atrium	heart
14	chr6:44666600-44667000	Enhancers	Stomach Smooth Muscle	stomach
15	chr6:44666600-44667400	Enhancers	Fetal Stomach	stomach
16	chr6:44666600-44667400	Enhancers	HSMM	muscle

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