Variant report

Variant	rs641340
Chromosome Location	chr6:44812511-44812512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDC5L-7	chr6:44811739-44813069	ucscGeneNc_uc003oxm_2

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1283921	1.00[ASN][1000 genomes]
rs1283922	1.00[ASN][1000 genomes]
rs1283924	1.00[ASN][1000 genomes]
rs1293597	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1296351	1.00[ASN][1000 genomes]
rs1298942	1.00[ASN][1000 genomes]
rs17335164	1.00[ASN][1000 genomes]
rs190137	1.00[ASN][1000 genomes]
rs2249560	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227804	1.00[ASN][1000 genomes]
rs227805	1.00[ASN][1000 genomes]
rs227807	1.00[ASN][1000 genomes]
rs227809	1.00[ASN][1000 genomes]
rs227810	1.00[ASN][1000 genomes]
rs227811	1.00[ASN][1000 genomes]
rs227815	1.00[ASN][1000 genomes]
rs227816	1.00[ASN][1000 genomes]
rs227820	1.00[ASN][1000 genomes]
rs227821	1.00[ASN][1000 genomes]
rs227822	1.00[ASN][1000 genomes]
rs227823	1.00[ASN][1000 genomes]
rs227825	1.00[ASN][1000 genomes]
rs227856	1.00[ASN][1000 genomes]
rs2461016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35751658	1.00[ASN][1000 genomes]
rs3857587	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs489757	1.00[ASN][1000 genomes]
rs491590	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs545441	1.00[ASN][1000 genomes]
rs551817	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552919	1.00[ASN][1000 genomes]
rs552972	1.00[ASN][1000 genomes]
rs554682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570778	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613948	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625595	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs626965	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631320	1.00[ASN][1000 genomes]
rs641011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs666652	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44798400-44822800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:44808600-44821000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44811200-44814200	Weak transcription	Right Atrium	heart
4	chr6:44812200-44813400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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