Variant report

Variant	rs1298942
Chromosome Location	chr6:44654371-44654372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1283921	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283924	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283925	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1283926	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1296351	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1680902	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17335164	1.00[ASN][1000 genomes]
rs190137	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227804	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227805	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227807	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227809	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227810	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227811	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227815	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227816	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227820	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227821	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227822	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227823	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227825	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227826	0.89[EUR][1000 genomes]
rs227856	1.00[ASN][1000 genomes]
rs2461016	1.00[ASN][1000 genomes]
rs489757	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491590	1.00[ASN][1000 genomes]
rs504907	1.00[ASN][1000 genomes]
rs545441	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551817	1.00[ASN][1000 genomes]
rs552919	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552972	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554682	1.00[ASN][1000 genomes]
rs567297	1.00[ASN][1000 genomes]
rs570778	1.00[ASN][1000 genomes]
rs613208	1.00[ASN][1000 genomes]
rs625595	1.00[ASN][1000 genomes]
rs631320	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641011	1.00[ASN][1000 genomes]
rs641340	1.00[ASN][1000 genomes]
rs666652	1.00[ASN][1000 genomes]
rs672098	1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44654200-44654400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:44654200-44657000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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