Variant report

Variant	rs1283926
Chromosome Location	chr6:44651735-44651736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1283921	0.89[EUR][1000 genomes]
rs1283922	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1283924	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1283925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1298942	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1680902	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1767800	0.88[EUR][1000 genomes]
rs227804	0.88[EUR][1000 genomes]
rs227805	0.89[EUR][1000 genomes]
rs2817118	0.88[EUR][1000 genomes]
rs489448	0.88[EUR][1000 genomes]
rs545441	0.89[EUR][1000 genomes]
rs546936	0.89[EUR][1000 genomes]
rs631320	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1283926	NFKBIE	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44644400-44652800	Weak transcription	HMEC	breast
2	chr6:44648200-44652600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:44648600-44652800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:44648800-44652600	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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