Variant report

Variant	rs227805
Chromosome Location	chr6:44665388-44665389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44640493..44642311-chr6:44662709..44665679,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1283921	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283922	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283924	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283925	0.89[EUR][1000 genomes]
rs1283926	0.89[EUR][1000 genomes]
rs1293597	1.00[ASN][1000 genomes]
rs1296351	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1298942	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203375	0.93[AFR][1000 genomes]
rs13208173	0.93[AFR][1000 genomes]
rs13217280	0.93[AFR][1000 genomes]
rs13220611	0.93[AFR][1000 genomes]
rs1680902	0.88[EUR][1000 genomes]
rs17335164	1.00[ASN][1000 genomes]
rs190137	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227804	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227807	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227809	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227810	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227811	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227815	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227816	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227820	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227821	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227822	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227823	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227825	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227826	0.89[EUR][1000 genomes]
rs227856	1.00[ASN][1000 genomes]
rs2461016	1.00[ASN][1000 genomes]
rs34438627	0.83[AFR][1000 genomes]
rs35202871	0.93[AFR][1000 genomes]
rs35270964	0.86[AFR][1000 genomes]
rs35440274	0.90[AFR][1000 genomes]
rs35939753	0.93[AFR][1000 genomes]
rs36010714	0.93[AFR][1000 genomes]
rs489757	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491590	1.00[ASN][1000 genomes]
rs504907	1.00[ASN][1000 genomes]
rs545441	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551817	1.00[ASN][1000 genomes]
rs552919	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552972	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554682	1.00[ASN][1000 genomes]
rs567297	1.00[ASN][1000 genomes]
rs570778	1.00[ASN][1000 genomes]
rs60957511	0.85[AFR][1000 genomes]
rs613208	1.00[ASN][1000 genomes]
rs613948	1.00[ASN][1000 genomes]
rs625595	1.00[ASN][1000 genomes]
rs626965	1.00[ASN][1000 genomes]
rs631320	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641011	1.00[ASN][1000 genomes]
rs641340	1.00[ASN][1000 genomes]
rs666652	1.00[ASN][1000 genomes]
rs672098	1.00[ASN][1000 genomes]
rs6905076	0.93[AFR][1000 genomes]
rs6905326	0.93[AFR][1000 genomes]
rs6905757	0.93[AFR][1000 genomes]
rs6923447	0.93[AFR][1000 genomes]
rs71564626	0.93[AFR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44657000-44667200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:44660000-44666400	Weak transcription	Right Atrium	heart
3	chr6:44662600-44669600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:44663600-44665800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:44663600-44665800	Enhancers	NHDF-Ad	bronchial
6	chr6:44664000-44665400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:44664000-44665600	Enhancers	HSMMtube	muscle
8	chr6:44664200-44665600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr6:44664400-44665400	Bivalent Enhancer	Placenta	Placenta
10	chr6:44664400-44665400	Bivalent Enhancer	Fetal Stomach	stomach
11	chr6:44664400-44665600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:44664400-44667400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:44664400-44667400	Enhancers	Fetal Muscle Leg	muscle
14	chr6:44664600-44665600	Enhancers	HSMM	muscle
15	chr6:44664600-44668600	Weak transcription	NH-A	brain
16	chr6:44664600-44668800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:44664600-44669800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:44664800-44666800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:44665000-44665400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:44665000-44665800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:44665200-44665400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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