Variant report

Variant	rs489448
Chromosome Location	chr6:44642025-44642026
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44640493..44642311-chr6:44662709..44665679,2	MCF-7	breast:
2	chr6:44635305..44638850-chr6:44639424..44643033,3	K562	blood:
3	chr6:44639630..44642555-chr6:44702558..44704571,3	MCF-7	breast:
4	chr6:44642016..44642706-chr6:44703078..44703822,2	MCF-7	breast:
5	chr6:44626035..44627596-chr6:44640686..44642713,2	MCF-7	breast:
6	chr6:44628498..44636418-chr6:44638711..44643963,7	MCF-7	breast:

rs_ID	r²[population]
rs12661936	1.00[ASN][1000 genomes]
rs1283924	0.90[EUR][1000 genomes]
rs1283925	0.88[EUR][1000 genomes]
rs1283926	0.88[EUR][1000 genomes]
rs1296351	0.85[EUR][1000 genomes]
rs1680902	0.87[EUR][1000 genomes]
rs1767800	0.97[EUR][1000 genomes]
rs190137	0.81[EUR][1000 genomes]
rs227807	0.85[EUR][1000 genomes]
rs227809	0.85[EUR][1000 genomes]
rs227810	0.85[EUR][1000 genomes]
rs227811	0.81[EUR][1000 genomes]
rs227815	0.81[EUR][1000 genomes]
rs227816	0.81[EUR][1000 genomes]
rs2817118	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs489757	0.85[EUR][1000 genomes]
rs546936	0.96[EUR][1000 genomes]
rs6911254	0.83[ASN][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44636000-44642200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:44636400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:44636400-44649200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:44636600-44647400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:44637400-44644000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:44637400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:44638400-44644800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:44638600-44645000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:44639200-44642800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:44639200-44647600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:44639400-44647400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:44639800-44643000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:44640000-44644400	Enhancers	HMEC	breast
14	chr6:44640000-44644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:44640200-44645000	Enhancers	NHEK	skin
16	chr6:44640800-44642800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:44641000-44647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:44641000-44647400	Weak transcription	HSMMtube	muscle
19	chr6:44641200-44642200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:44641200-44642400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:44641600-44642200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:44641600-44642400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:44641800-44642200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:44641800-44642400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:44641800-44642800	Enhancers	Placenta	Placenta
26	chr6:44641800-44645200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:44642000-44642200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:44642000-44643000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr6:44642000-44643000	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links