Variant report

Variant	rs546936
Chromosome Location	chr6:44649136-44649137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1283924	0.91[EUR][1000 genomes]
rs1283925	0.89[EUR][1000 genomes]
rs1283926	0.89[EUR][1000 genomes]
rs1296351	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1680902	0.88[EUR][1000 genomes]
rs1767800	0.99[EUR][1000 genomes]
rs190137	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs227807	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs227809	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs227810	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs227811	0.82[EUR][1000 genomes]
rs227815	0.82[EUR][1000 genomes]
rs227816	0.82[EUR][1000 genomes]
rs227821	0.86[AMR][1000 genomes]
rs2817118	0.99[EUR][1000 genomes]
rs489448	0.96[EUR][1000 genomes]
rs489757	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44636400-44649200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:44644400-44652800	Weak transcription	HMEC	breast
3	chr6:44644600-44649200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:44647400-44650000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:44647400-44650800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44647600-44651000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:44647800-44650400	Enhancers	HSMM	muscle
8	chr6:44648000-44649200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:44648200-44652600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:44648400-44650000	Enhancers	HSMMtube	muscle
11	chr6:44648600-44652800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:44648800-44650400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:44648800-44652600	Weak transcription	NHEK	skin
14	chr6:44649000-44649200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:44649000-44649800	Bivalent Enhancer	NH-A	brain
16	chr6:44649000-44650000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:44649000-44650000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:44649000-44650000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:44649000-44650400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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