Variant report

Variant	rs227842
Chromosome Location	chr6:44691573-44691574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44681103..44683539-chr6:44690355..44693257,2	MCF-7	breast:
2	chr6:44691206..44694141-chr6:44700242..44701897,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1283936	1.00[AMR][1000 genomes]
rs1293582	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1640767	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1767799	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs227806	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227856	0.86[EUR][1000 genomes]
rs2461017	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3997494	1.00[EUR][1000 genomes]
rs471765	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs480657	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs481914	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs482878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490515	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs497557	1.00[AMR][1000 genomes]
rs510167	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs519122	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs527145	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs528158	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs538857	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs539002	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs542910	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs549243	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs551338	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs551955	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs553811	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55641	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs557425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs560765	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs563708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs569999	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs588813	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs589285	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs603778	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs604040	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs604486	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs604873	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs622051	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs649617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs652851	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs655669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs662599	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs669087	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs857604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817071	chr6:44670110-44698829	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44689600-44693200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:44690200-44691800	Enhancers	Brain Germinal Matrix	brain
3	chr6:44690200-44693200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:44690400-44698000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:44690800-44691600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:44691000-44691600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:44691000-44691800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:44691000-44691800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:44691000-44692000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:44691000-44692000	Enhancers	Spleen	Spleen
11	chr6:44691200-44691600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:44691200-44691600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:44691200-44691800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:44691200-44691800	Enhancers	HSMMtube	muscle
15	chr6:44691400-44692600	Weak transcription	Adipose Nuclei	Adipose
16	chr6:44691400-44692800	Weak transcription	Right Atrium	heart
17	chr6:44691400-44695400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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