Variant report

Variant	rs527145
Chromosome Location	chr6:44862362-44862363
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1159132	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1284991	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1293582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360198	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1411150	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1475533	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1475534	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1548285	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1640767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797157	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2183295	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs227806	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs227814	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227824	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227828	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227829	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227834	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227842	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227846	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227856	0.83[EUR][1000 genomes]
rs2396368	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2461017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3997494	0.97[EUR][1000 genomes]
rs4711808	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4711811	0.84[EUR][1000 genomes]
rs4711812	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs471765	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs480657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs481914	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs482878	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs490515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs510167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs519122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs522282	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs528158	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs538857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs539002	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs540247	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs542910	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs549243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs551338	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs551955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs553811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs556352	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55641	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs557425	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs560765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs563708	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs564286	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs569999	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs588813	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs589285	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs603778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs604040	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs604486	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs604873	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs609571	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs622051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6458416	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs649617	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs652851	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs655669	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs656463	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs662599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs669087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs685327	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs686938	0.82[EUR][1000 genomes]
rs6902685	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6912845	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7739872	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs857604	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9357463	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9357465	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9357468	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9369525	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9369527	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9381355	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9381363	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44854600-44866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:44860800-44862800	Weak transcription	Fetal Heart	heart

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