Variant report

Variant	rs604040
Chromosome Location	chr6:44801700-44801701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44794819..44797598-chr6:44800696..44803028,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1159132	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1283936	1.00[AMR][1000 genomes]
rs1293582	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1329708	1.00[CEU][hapmap]
rs1360198	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1411150	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1475533	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1475534	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1536904	0.85[CEU][hapmap]
rs1536906	0.85[CEU][hapmap]
rs1548285	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1640767	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1767799	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2183295	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs227806	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs227856	0.86[EUR][1000 genomes]
rs2396368	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2461017	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3997494	1.00[EUR][1000 genomes]
rs4711808	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4714835	1.00[CEU][hapmap]
rs471765	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs480657	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs481914	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs482878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490515	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs497557	1.00[AMR][1000 genomes]
rs510167	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs519122	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs522282	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs527145	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs528158	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs538857	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs539002	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs540247	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs542910	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs549243	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs551338	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs551955	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs553811	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs556352	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55641	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs557425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs560765	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs563708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs564286	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs569999	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs588813	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs589285	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs592240	0.85[CEU][hapmap]
rs603778	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs604486	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs604873	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs609571	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs622051	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs625782	0.85[CEU][hapmap]
rs6458416	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs649617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs652851	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs655669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs656463	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs662599	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs669087	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs685327	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs686938	0.82[CEU][hapmap]
rs6902685	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7739872	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857598	1.00[CEU][hapmap]
rs857604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357463	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9357465	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9369525	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9369527	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9381355	1.00[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44791000-44805600	Weak transcription	Ovary	ovary
2	chr6:44792000-44811600	Weak transcription	Pancreas	Pancrea
3	chr6:44798200-44811200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:44798400-44822800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:44798600-44810600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:44799000-44802600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:44799200-44802000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:44799200-44806000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:44799600-44801800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:44799800-44803000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:44800000-44804800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:44800400-44802000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:44801400-44802600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:44801600-44801800	Enhancers	GM12878-XiMat	blood

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