Variant report

Variant	rs1632504
Chromosome Location	chr6:45105512-45105513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1023092	1.00[CEU][hapmap]
rs1159132	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1284956	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1284957	0.86[EUR][1000 genomes]
rs1284958	0.81[EUR][1000 genomes]
rs1284959	1.00[EUR][1000 genomes]
rs1284963	0.88[EUR][1000 genomes]
rs1284970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284976	0.88[EUR][1000 genomes]
rs1284977	0.88[EUR][1000 genomes]
rs1284978	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1284981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284984	0.88[EUR][1000 genomes]
rs1284985	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284991	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284994	0.88[EUR][1000 genomes]
rs1284996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1285001	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1285012	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1285015	1.00[EUR][1000 genomes]
rs1285016	0.81[EUR][1000 genomes]
rs1285017	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1329708	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1360198	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411150	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1475533	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1475534	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1536904	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs1536906	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs1548285	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1576380	0.85[EUR][1000 genomes]
rs1576381	0.82[EUR][1000 genomes]
rs1625102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1629619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1630758	0.88[EUR][1000 genomes]
rs1748246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797162	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2149872	1.00[CEU][hapmap]
rs2183295	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2396368	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2396378	0.84[EUR][1000 genomes]
rs2763135	0.81[EUR][1000 genomes]
rs4278013	0.88[EUR][1000 genomes]
rs4296887	0.94[EUR][1000 genomes]
rs4323299	1.00[EUR][1000 genomes]
rs4437465	1.00[EUR][1000 genomes]
rs4452642	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4469289	0.81[EUR][1000 genomes]
rs4711808	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4711810	1.00[CEU][hapmap]
rs4711811	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4711812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4714835	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs522282	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs540247	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs542910	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs556352	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55641	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56000304	0.81[EUR][1000 genomes]
rs56051040	0.81[EUR][1000 genomes]
rs56142650	0.81[EUR][1000 genomes]
rs56300352	0.81[EUR][1000 genomes]
rs564286	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs592240	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs609571	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs625782	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs6458416	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6458417	1.00[CEU][hapmap]
rs652851	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs656463	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs685327	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs686938	0.82[CEU][hapmap]
rs6902685	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6908280	0.88[EUR][1000 genomes]
rs6912845	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932726	0.97[EUR][1000 genomes]
rs6933742	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs72857063	0.81[EUR][1000 genomes]
rs72858503	0.81[EUR][1000 genomes]
rs72858507	0.81[EUR][1000 genomes]
rs7739872	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7750753	1.00[CEU][hapmap]
rs7753900	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7756721	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7765383	0.94[EUR][1000 genomes]
rs857598	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9296454	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs9349320	0.94[EUR][1000 genomes]
rs9357463	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9357465	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357468	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9369525	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9369527	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9369554	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9369557	0.97[EUR][1000 genomes]
rs9381355	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9381363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395061	0.82[CEU][hapmap]
rs9395096	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9463084	0.87[EUR][1000 genomes]
rs9472429	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9472459	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45103200-45116200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:45103400-45115400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:45103600-45106000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:45103600-45107800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links