Variant report

Variant	rs1285016
Chromosome Location	chr6:45167068-45167069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:45166970-45168751	HepG2	liver:	n/a	chr6:45167947-45167963 chr6:45168678-45168694
2	MAFK	chr6:45166886-45167074	HepG2	liver:	n/a	n/a
3	CTCF	chr6:45166960-45167110	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
MIR586	TF binding region

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1284957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1284958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1284959	0.81[EUR][1000 genomes]
rs1284963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1284970	0.81[EUR][1000 genomes]
rs1284971	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1284976	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1284977	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1284981	0.81[EUR][1000 genomes]
rs1284984	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1284985	0.81[EUR][1000 genomes]
rs1284991	0.81[EUR][1000 genomes]
rs1284994	0.92[EUR][1000 genomes]
rs1284996	0.81[EUR][1000 genomes]
rs1284997	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1284998	0.88[EUR][1000 genomes]
rs1285001	0.81[EUR][1000 genomes]
rs1285012	0.81[EUR][1000 genomes]
rs1285015	0.81[EUR][1000 genomes]
rs1285017	0.81[EUR][1000 genomes]
rs1329708	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1329712	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1411150	0.81[EUR][1000 genomes]
rs1536906	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1576380	0.89[EUR][1000 genomes]
rs1576381	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1625102	0.81[EUR][1000 genomes]
rs1629619	0.81[EUR][1000 genomes]
rs1630758	0.92[EUR][1000 genomes]
rs1632504	0.81[EUR][1000 genomes]
rs1748241	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1748246	0.81[EUR][1000 genomes]
rs1797155	0.81[EUR][1000 genomes]
rs1797157	0.81[EUR][1000 genomes]
rs1797160	0.81[EUR][1000 genomes]
rs1797162	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2396378	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2763135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4323299	0.81[EUR][1000 genomes]
rs4437465	0.81[EUR][1000 genomes]
rs4452642	0.81[EUR][1000 genomes]
rs4469289	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4520015	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4711811	0.81[EUR][1000 genomes]
rs4711812	0.81[EUR][1000 genomes]
rs4714831	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4714835	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4714849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56000304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56051040	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56142650	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56218508	1.00[AFR][1000 genomes]
rs56300352	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6903524	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6908280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6912845	0.81[EUR][1000 genomes]
rs6933742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72857008	1.00[AFR][1000 genomes]
rs72857044	1.00[AFR][1000 genomes]
rs72857059	1.00[AFR][1000 genomes]
rs72857063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72857065	1.00[AFR][1000 genomes]
rs72857066	1.00[AFR][1000 genomes]
rs72858503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72858507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72858522	1.00[AFR][1000 genomes]
rs72858523	1.00[AFR][1000 genomes]
rs72858529	1.00[AFR][1000 genomes]
rs72858566	1.00[AFR][1000 genomes]
rs72867426	1.00[AFR][1000 genomes]
rs72867440	1.00[AFR][1000 genomes]
rs72867449	1.00[AFR][1000 genomes]
rs72867458	1.00[AFR][1000 genomes]
rs72867470	1.00[AFR][1000 genomes]
rs72867485	1.00[AFR][1000 genomes]
rs72869128	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72869130	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72869143	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72870914	1.00[AFR][1000 genomes]
rs72870922	1.00[AFR][1000 genomes]
rs7753900	0.81[EUR][1000 genomes]
rs7756721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7763079	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7775597	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9296454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9357465	0.81[EUR][1000 genomes]
rs9357468	0.81[EUR][1000 genomes]
rs9381356	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9381363	0.81[EUR][1000 genomes]
rs9395061	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9472429	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9472430	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9472459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45162000-45171800	Enhancers	Dnd41	blood
2	chr6:45164600-45167200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:45164800-45167200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:45166000-45167200	Enhancers	HepG2	liver
5	chr6:45166400-45167800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:45167000-45167400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:45167000-45167800	Enhancers	Fetal Intestine Small	intestine
8	chr6:45167000-45168200	Enhancers	Fetal Intestine Large	intestine
9	chr6:45167000-45168800	Enhancers	Liver	Liver

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