Variant report

Variant	rs72870922
Chromosome Location	chr6:45131520-45131521
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45126389..45128813-chr6:45129445..45131831,2	K562	blood:

Variant related genes	Relation type
ENSG00000219384	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1284957	1.00[AFR][1000 genomes]
rs1284958	1.00[AFR][1000 genomes]
rs1284963	1.00[AFR][1000 genomes]
rs1284971	1.00[AFR][1000 genomes]
rs1284976	1.00[AFR][1000 genomes]
rs1284977	1.00[AFR][1000 genomes]
rs1284984	1.00[AFR][1000 genomes]
rs1284997	1.00[AFR][1000 genomes]
rs1285016	1.00[AFR][1000 genomes]
rs1329708	1.00[AFR][1000 genomes]
rs1329712	1.00[AFR][1000 genomes]
rs1536906	1.00[AFR][1000 genomes]
rs1576381	1.00[AFR][1000 genomes]
rs1748241	1.00[AFR][1000 genomes]
rs1797162	1.00[AFR][1000 genomes]
rs2396378	1.00[AFR][1000 genomes]
rs2763135	1.00[AFR][1000 genomes]
rs4469289	1.00[AFR][1000 genomes]
rs4520015	1.00[AFR][1000 genomes]
rs4714831	1.00[AFR][1000 genomes]
rs4714835	1.00[AFR][1000 genomes]
rs4714849	1.00[AFR][1000 genomes]
rs56000304	1.00[AFR][1000 genomes]
rs56041234	1.00[EUR][1000 genomes]
rs56218508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59024254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs592240	1.00[AFR][1000 genomes]
rs625782	1.00[AFR][1000 genomes]
rs6908280	1.00[AFR][1000 genomes]
rs6933742	1.00[AFR][1000 genomes]
rs72857008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72857044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72857059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72857065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72857066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858503	1.00[AFR][1000 genomes]
rs72858507	1.00[AFR][1000 genomes]
rs72858522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72858523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72858529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72858566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72865980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72867405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72867426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869128	1.00[AFR][1000 genomes]
rs72869130	1.00[AFR][1000 genomes]
rs72869143	1.00[AFR][1000 genomes]
rs72869175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72870914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73738603	1.00[AMR][1000 genomes]
rs7756721	1.00[AFR][1000 genomes]
rs7763079	1.00[AFR][1000 genomes]
rs7775597	1.00[AFR][1000 genomes]
rs9296454	1.00[AFR][1000 genomes]
rs9381356	1.00[AFR][1000 genomes]
rs9395061	1.00[AFR][1000 genomes]
rs9472429	1.00[AFR][1000 genomes]
rs9472430	1.00[AFR][1000 genomes]
rs9472459	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45130200-45132600	Weak transcription	Aorta	Aorta
2	chr6:45130600-45133200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr6:45130800-45132200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:45131000-45131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:45131000-45133000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:45131200-45132000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:45131200-45132000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:45131200-45132400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:45131400-45132200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:45131400-45133000	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links